BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0441.p
         (389 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans...   709   0.0  
gi|300312089|ref|YP_003776181.1| lipoprotein release ABC transpo...    57   3e-09

>gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 657

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/389 (92%), Positives = 381/389 (97%)

Query: 1   MSLLAMNAHRLRSFLTMLGIIIGIASVVSVVALGSGSREQILSDISSMGTNTIDIFPGTD 60
           MSLLAMNAHRLRSFLTMLGIIIGIASVVSVVALGSGSREQIL+DIS+MGTNTIDIFPG D
Sbjct: 269 MSLLAMNAHRLRSFLTMLGIIIGIASVVSVVALGSGSREQILADISAMGTNTIDIFPGAD 328

Query: 61  FGDMKSAAIRTLTPADAAALAEQNYVDSVTPSVSTASSARYGNISVTATINGVGEQYFRV 120
           FGDMKSA+IRTLTPADAAALAEQN+VDSVTPSV+T+SSARYGNISVTATINGVGEQYFRV
Sbjct: 329 FGDMKSASIRTLTPADAAALAEQNFVDSVTPSVATSSSARYGNISVTATINGVGEQYFRV 388

Query: 121 RGLKMAQGMSFDNDSIRRQAQEVVIDANTYKKLFPNGGNALGEVIFLGSVPCRVIGVTQK 180
           RGLKMAQG SFD + IRR AQEVVIDAN+YKKLFP+GGNALGEVIFLGSVPCR+IGVTQK
Sbjct: 389 RGLKMAQGKSFDTEGIRRYAQEVVIDANSYKKLFPDGGNALGEVIFLGSVPCRIIGVTQK 448

Query: 181 RENGFGNNSSLNVWVPYTTAMTRVIGQRYLSGITVRVSDKVPSAAAEQGITQLMTLRHRT 240
           RENGFGNN++LNVWVPYTTAM+RVIGQR+LSGITVRV+D+VPSAAAEQGI +LMTLRHRT
Sbjct: 449 RENGFGNNNALNVWVPYTTAMSRVIGQRHLSGITVRVNDQVPSAAAEQGIVELMTLRHRT 508

Query: 241 KDFYIFNTDSIRQTIEKATATLTLLVSMIALISLVVGGIGVMNIMLVSVTERTREIGVRM 300
           KDFY+FNTDSIRQT+EKATATLTLLVSMIALISLVVGGIGVMNIMLVSVTERTREIGVRM
Sbjct: 509 KDFYLFNTDSIRQTVEKATATLTLLVSMIALISLVVGGIGVMNIMLVSVTERTREIGVRM 568

Query: 301 AVGARQGDIMQQFLIEAVLVCLAGGLLGVLLALSFGAVFAHFVSSFHLIYSTASIVSAFA 360
           AVGARQ DIMQQFLIEAVLVCLAGGLLGVLLALSFGA+F+HFVSSF +IYSTASIVSAFA
Sbjct: 569 AVGARQSDIMQQFLIEAVLVCLAGGLLGVLLALSFGALFSHFVSSFRMIYSTASIVSAFA 628

Query: 361 CSTLIGVVFGFLPARNAARLNPVDALARE 389
           CSTLIGVVFGFLPARNAARLNPVDALARE
Sbjct: 629 CSTLIGVVFGFLPARNAARLNPVDALARE 657


>gi|300312089|ref|YP_003776181.1| lipoprotein release ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 421

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 184/417 (44%), Gaps = 69/417 (16%)

Query: 13  SFLTMLGIIIGIASVVSVVALGSGSREQILSDISSMGTNTIDIFPGTDFGDMKSAAIRTL 72
           S ++M GI +G+A+++ V+++ +G ++++   + S+  + I++F  +  G MK       
Sbjct: 34  SLISMAGIALGVAALIVVLSVMNGFQKEVRDRMLSVLAH-IEVFDAS--GSMK------- 83

Query: 73  TPADAAALAEQNYVDSVTPSVSTASS--ARYGNISVTATINGVGEQYFRVRGL------- 123
              D  A+A+Q + +   P V  A+   A    ++   ++ GV      VRG+       
Sbjct: 84  ---DWQAVAKQTFQN---PEVLGAAPYVAAQAMMTRDDSVRGV-----LVRGVLPQEEPK 132

Query: 124 -----KMAQGMSFDNDSIRRQAQEVVIDANTYKKLFPNGGNAL------GEVIFLGSVP- 171
                K  +  SFD  S++     +VI     + L    G+ +      G+V   G +P 
Sbjct: 133 VSDVAKQVKQGSFD--SLKPGEFNIVIGGELARGLRVGLGDKVTLIAPQGQVTPAGVLPR 190

Query: 172 CRVIGVTQKRENGFGNNSSLNVWVPYTTAMTRVIGQRYLSGITVRVSDKVPSAAAEQGIT 231
            +   VT   E G     S   ++    A T +      +G+ +R+ D + +    Q + 
Sbjct: 191 LKQFTVTGIFEAGHYEFDSSLAFIDLQDAET-LFRMDAPTGVRLRIRDMLQAPQVTQELA 249

Query: 232 QLMTLRHRTKDFYIFNTDSIRQTIEKATATLTLLVSMIALISLVVGGIGVMNIMLVSVTE 291
                R  T D Y+ +          A  T   ++ +I  + + V    +++ ++++VT+
Sbjct: 250 -----RTLTGDLYLRDWSQQNSNWFAAVKTEKRMMFIILTLIIAVAAFNLVSTLVMTVTD 304

Query: 292 RTREIGVRMAVGARQGDIMQQFLIEAVLVCLAG-GL---LGVLLALSFGAVFAHFVSSFH 347
           +  +I +   +GA  G IM+ F+I+  LV L G G+   LGVL+AL+   V       FH
Sbjct: 305 KQADIAILRTLGASPGSIMKIFVIQGALVGLIGTGIGVGLGVLVALNIDVVVPAIERLFH 364

Query: 348 L------IYSTASIVSAFACSTL-----IGVVFGFL----PARNAARLNPVDALARE 389
           +      IY  + + S    S +     + VV  FL    P+ +AAR+ P +AL  E
Sbjct: 365 VQFLPKSIYVISELPSDLIWSDVYTIGGVAVVLAFLATLYPSWSAARVKPAEALRYE 421


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 913,832
Number of extensions: 32077
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 389
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,207,925
Effective search space: 364793350
Effective search space used: 364793350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)