BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0440.p
         (117 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans...   137   3e-34
gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp...    55   2e-09

>gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 657

 Score =  137 bits (344), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 77/97 (79%), Gaps = 3/97 (3%)

Query: 1   MNGGDVILADEPTGALDSHSGHEVMNILKELHAEGHTIIIVTHDMQVASNAQRIIEIKDG 60
           MNGGDVILADEPTGALDSHSG EV+ ILKELHAEGHTIIIVTHDMQVAS+AQRIIEIKDG
Sbjct: 161 MNGGDVILADEPTGALDSHSGQEVIKILKELHAEGHTIIIVTHDMQVASHAQRIIEIKDG 220

Query: 61  LIIADRRN--SAPE-AAAVSGIIKQERQQHRQASAWR 94
           +IIADRRN  + P  A   S       +Q RQA  WR
Sbjct: 221 VIIADRRNEETVPALATTASNNTGASARQGRQARPWR 257


>gi|300311552|ref|YP_003775644.1| ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 234

 Score = 54.7 bits (130), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 1/56 (1%)

Query: 6   VILADEPTGALDSHSGHEVMNILKELHAE-GHTIIIVTHDMQVASNAQRIIEIKDG 60
           ++LADEPTG+LD+ +G  V+ ++ EL+ E G T+++VTHD  +A+  QR I I  G
Sbjct: 176 LLLADEPTGSLDAATGEAVIELMFELNRERGSTLVLVTHDNAMAARCQRTITIAAG 231


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.130    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 361,908
Number of extensions: 12305
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 3
Length of query: 117
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,269,480
Effective search space: 54587640
Effective search space used: 54587640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)