BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0438.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311362|ref|YP_003775454.1| HlyD family secretion, possible...   331   2e-92
gi|300312743|ref|YP_003776835.1| membrane-fusion protein [Herbas...    91   9e-20

>gi|300311362|ref|YP_003775454.1| HlyD family secretion, possible
           efflux component [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score =  331 bits (849), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 176/210 (83%), Positives = 190/210 (90%), Gaps = 1/210 (0%)

Query: 1   VVAIVAQEGQTVNANQSTPTIIKVARMDTVTIKAQISEADVVRVKPGLPVYFTILGDPEH 60
           VVAIVAQEGQTVNANQSTPTIIKVARMDTVTIKAQISEADVVRVKPG PV+FTILGDP+H
Sbjct: 198 VVAIVAQEGQTVNANQSTPTIIKVARMDTVTIKAQISEADVVRVKPGQPVFFTILGDPDH 257

Query: 61  RYRTTLRAIEPAPDSILQDDTTTSTTSTTTSSSSSTAI-YYNGLLDLPNPDGKLRISMTT 119
           RYRTTLRAIEPAPDSILQDDT++STTS T+SSS+S+   YYNGLLD+PNPDGKLRISMTT
Sbjct: 258 RYRTTLRAIEPAPDSILQDDTSSSTTSITSSSSASSTAIYYNGLLDVPNPDGKLRISMTT 317

Query: 120 QVNIVLSEAKDALVVPSTALGAKDAQGRYTVRVLDAQGLAQERQVRTGINTNAQVQIIEG 179
           QVNIVLSEA +ALV+PSTALGAK A G YTVRVLD QG A ER+VR GINTNA VQI+EG
Sbjct: 318 QVNIVLSEASNALVLPSTALGAKAADGSYTVRVLDDQGQAHERKVRIGINTNALVQIVEG 377

Query: 180 LKAGERVVTGTAVPGTADSSSEHRGPPPRM 209
           +KAGERVVTGT +PG A SSS H GPPP M
Sbjct: 378 VKAGERVVTGTVLPGAAASSSAHDGPPPHM 407


>gi|300312743|ref|YP_003776835.1| membrane-fusion protein
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score = 90.5 bits (223), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 16/187 (8%)

Query: 1   VVAIVAQEGQTVNANQSTPTIIKVARMDTVTIKAQISEADVVRVKPGLPVYFTILGDPEH 60
           +V + A+ GQ V ANQ    ++++A +  +T++  ++E DV R++ G+  YFT  G P  
Sbjct: 216 IVTLNARPGQMVAANQEA--LMRIADLSRMTVQVPVAEEDVTRLQKGMTAYFTTPGYPGK 273

Query: 61  RYRTTLRAIEPAPDSILQDDTTTSTTSTTTSSSSSTAIYYNGLLDLPNPDGKLRISMTTQ 120
           R+   LR I   P              T  S       +Y    D+ NP  +L   M+  
Sbjct: 274 RWSGKLRQIMLLP--------------TDDSGRQGKKAFYTVFFDVANPSRELMSGMSAD 319

Query: 121 VNIVLSEAKDALVVPSTALGAKDAQGRYTVRVLDAQGLAQERQVRTGINTNAQVQIIEGL 180
           V  VL+ A+    +P T +      G  TV+V+ A G  + R+++ GI  N + Q++ GL
Sbjct: 320 VYFVLARAEHVPTIPRTLVTKPGMDGTQTVKVVLADGKLETRKIKIGIRDNERAQVLSGL 379

Query: 181 KAGERVV 187
           K GE+V+
Sbjct: 380 KEGEQVL 386


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.127    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 597,253
Number of extensions: 20893
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 128 (53.9 bits)