BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0437.p
         (180 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311362|ref|YP_003775454.1| HlyD family secretion, possible...   210   5e-56
gi|300312743|ref|YP_003776835.1| membrane-fusion protein [Herbas...    69   2e-13

>gi|300311362|ref|YP_003775454.1| HlyD family secretion, possible
           efflux component [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score =  210 bits (535), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 113/140 (80%), Positives = 126/140 (90%)

Query: 1   MNIAYFRRPKILLLSLAVLLAGGYLVHRALTPPAPPSYLTATASVADIQDVVLASGTVKA 60
           M +A  RRPK + L+L VLL   +++   LTPPAPP+YL+ATA VADIQDVVLASGTVKA
Sbjct: 3   MKLAQLRRPKFIFLALLVLLIAAWIIRSVLTPPAPPTYLSATARVADIQDVVLASGTVKA 62

Query: 61  YKQVSVGAQVSGQIKSLKVALGERVKKGQLVAEIDSLTQANALASAEYSLQNLQAQLRAK 120
           YKQVSVGAQVSGQIKSLKVALG++VKKGQLVAEIDSLTQANALASAE+SLQNLQAQLRAK
Sbjct: 63  YKQVSVGAQVSGQIKSLKVALGDQVKKGQLVAEIDSLTQANALASAEFSLQNLQAQLRAK 122

Query: 121 EATLKQAQLAYARQQMMLAA 140
           EA+LKQAQLAYARQ+MMLA 
Sbjct: 123 EASLKQAQLAYARQKMMLAG 142


>gi|300312743|ref|YP_003776835.1| membrane-fusion protein
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score = 69.3 bits (168), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 6/140 (4%)

Query: 14  LSLAVLLAGGYLVH------RALTPPAPPSYLTATASVADIQDVVLASGTVKAYKQVSVG 67
           ++L ++L GGY ++           P P    T T   AD++ VV A+G V A   V VG
Sbjct: 28  VALVIVLGGGYWLYSRQQPPPPAPKPIPVKLETVTVERADLEQVVNATGNVVAQDYVDVG 87

Query: 68  AQVSGQIKSLKVALGERVKKGQLVAEIDSLTQANALASAEYSLQNLQAQLRAKEATLKQA 127
           ++V+GQI  + V +GE VK G+L+A +    Q++ + +   +L  L+A+L  + A L  A
Sbjct: 88  SKVAGQISDVDVVVGETVKAGKLLATVAPAVQSSRIENNRATLARLKAELAGQNAQLDFA 147

Query: 128 QLAYARQQMMLAATPARART 147
           QL + RQ  + A    R  +
Sbjct: 148 QLQFQRQTQLKAENATREES 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.127    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 281,066
Number of extensions: 8052
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 180
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 101
Effective length of database: 1,245,805
Effective search space: 125826305
Effective search space used: 125826305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)