BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0429.p
         (445 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311370|ref|YP_003775462.1| flagellar hook-length control p...   478   e-136

>gi|300311370|ref|YP_003775462.1| flagellar hook-length control
           protein [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score =  478 bits (1231), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 300/449 (66%), Positives = 339/449 (75%), Gaps = 22/449 (4%)

Query: 1   MNTSLPLLNVITGSQAATGSRSGNPADSFSADVPFNQVLNSQVSTRVQDNQAQARQAQQN 60
           MNTSLPLLNVITGSQAATG+RS NPADSFSADVPFNQVLNSQVSTR Q N +Q +     
Sbjct: 1   MNTSLPLLNVITGSQAATGARSANPADSFSADVPFNQVLNSQVSTRNQQNPSQDKPQ--- 57

Query: 61  ADTQAANAQAAAKQAATNQQSQTAANNASKSAANDGSDQSSQVSDKDEDEDSSDTATQAS 120
                     AA++      SQ   + +S  A+     +  Q S KDED+DS DTATQAS
Sbjct: 58  ----------AAQEQQPAAPSQPTQSASSAKASAANGSEQKQDSAKDEDKDSDDTATQAS 107

Query: 121 AELLALVANIAQNAVKPAADGKAKGDGSAADLLAQAKRGSGKLSLSDQQQALADD-KQGK 179
           AELLALVANIAQNAVKP  DGK+  + + ADLLAQAKRG   LSL+D+QQALA D K GK
Sbjct: 108 AELLALVANIAQNAVKPVTDGKS--EHTDADLLAQAKRGGASLSLADEQQALAGDGKDGK 165

Query: 180 VDPAALQDALAAAKGKQDAAASELARKSNA-EANPAPQASNAKDAKPAIDLGA-AAKAEP 237
           +D A LQ +LAA KGKQD AA++LARK+NA EANP   A  AK  KPA+DLG+  A+A  
Sbjct: 166 IDLAGLQSSLAANKGKQDGAAADLARKANAAEANPT-DAHAAKGEKPAVDLGSEKAQALS 224

Query: 238 KDDASALTARAQLNKATPELAAPAARQDAAPAAPTPVVLPAMQQAAVASQPQAVFAPAYS 297
           K+DAS L  RAQ  KAT E  A  A+Q+   A PTPVV+PAMQQA  A+Q QAVF   Y+
Sbjct: 225 KEDASTLANRAQYGKATTETVA-TAKQELPQATPTPVVMPAMQQALAANQTQAVFGTTYT 283

Query: 298 DKIQSNVGSAGWNQALGTKITWMATAGMQSASLSLNPPDLGPMQVVLNVHNQQADATFIT 357
           DKIQ NVGSAGW+QA+G KITWMAT G+QSASL+LNPPDLGPMQVVLNVHNQQADATFIT
Sbjct: 284 DKIQPNVGSAGWDQAVGNKITWMATGGIQSASLTLNPPDLGPMQVVLNVHNQQADATFIT 343

Query: 358 AQPEVKQALEAAMPKLREMMDQAGIQLGQANVQTGMPNQQQGAGNGQQQARSGS-SGSFG 416
           AQPEVKQALEAAMPKLREMMDQAGIQLGQA V TGMPNQQQGA  GQQQARS S +G  G
Sbjct: 344 AQPEVKQALEAAMPKLREMMDQAGIQLGQATVNTGMPNQQQGANGGQQQARSSSGAGGAG 403

Query: 417 KEQEADVAVNGTATATATTSGLGLVDTFA 445
           +EQ+ ++A+   A    TTSGLGLVDTFA
Sbjct: 404 QEQDGEIAIT-GAATATTTSGLGLVDTFA 431


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.303    0.116    0.304 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 736,993
Number of extensions: 19829
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 357
Effective length of database: 1,203,190
Effective search space: 429538830
Effective search space used: 429538830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 132 (55.5 bits)