BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0426.p
         (55 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309374|ref|YP_003773466.1| hypothetical protein Hsero_0028...   103   4e-24
gi|300309371|ref|YP_003773463.1| signal peptide protein [Herbasp...    95   1e-21
gi|300309369|ref|YP_003773461.1| hypothetical protein Hsero_0023...    80   3e-17
gi|300309368|ref|YP_003773460.1| hypothetical protein Hsero_0022...    80   4e-17

>gi|300309374|ref|YP_003773466.1| hypothetical protein Hsero_0028
           [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  103 bits (256), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 47/54 (87%), Positives = 51/54 (94%)

Query: 1   VSVWFYPLAMSKHDRPLLERMHSGLQTLGRLATAVRVLRKGDRQIGPYRGQEFL 54
           VS+WFYPLAMSKHDRPLL+RM SGLQTLG LATAVR LRKGDRQ+GPY+GQEFL
Sbjct: 193 VSLWFYPLAMSKHDRPLLDRMSSGLQTLGHLATAVRTLRKGDRQVGPYQGQEFL 246


>gi|300309371|ref|YP_003773463.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 352

 Score = 94.7 bits (234), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 48/54 (88%)

Query: 1   VSVWFYPLAMSKHDRPLLERMHSGLQTLGRLATAVRVLRKGDRQIGPYRGQEFL 54
           VSVWFYPL MSKHD+PLL RM S +Q+LGRLA AVRVLRKG+RQ+GPY GQEFL
Sbjct: 221 VSVWFYPLLMSKHDKPLLTRMSSAIQSLGRLAAAVRVLRKGERQVGPYTGQEFL 274


>gi|300309369|ref|YP_003773461.1| hypothetical protein Hsero_0023
           [Herbaspirillum seropedicae SmR1]
          Length = 353

 Score = 80.1 bits (196), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 45/54 (83%)

Query: 1   VSVWFYPLAMSKHDRPLLERMHSGLQTLGRLATAVRVLRKGDRQIGPYRGQEFL 54
           VSVWFYPL++  H +PLL+R+   LQ LGR+AT+V  LR+GDRQ+GPY+GQEFL
Sbjct: 222 VSVWFYPLSLRAHSQPLLDRVGGVLQMLGRMATSVHALRRGDRQVGPYKGQEFL 275


>gi|300309368|ref|YP_003773460.1| hypothetical protein Hsero_0022
           [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score = 79.7 bits (195), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 44/54 (81%)

Query: 1   VSVWFYPLAMSKHDRPLLERMHSGLQTLGRLATAVRVLRKGDRQIGPYRGQEFL 54
           VS+WFYPL+   H  PLL+R+   LQ LGR+AT+V VLR+GDRQ+GPY+GQEFL
Sbjct: 226 VSIWFYPLSRRAHSAPLLDRVGGVLQALGRMATSVHVLRRGDRQVGPYKGQEFL 279


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.141    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 166,599
Number of extensions: 4529
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 4
Length of query: 55
Length of database: 1,619,870
Length adjustment: 28
Effective length of query: 27
Effective length of database: 1,487,290
Effective search space: 40156830
Effective search space used: 40156830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 123 (52.0 bits)