BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0425.p
         (87 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309374|ref|YP_003773466.1| hypothetical protein Hsero_0028...   131   9e-33
gi|300309371|ref|YP_003773463.1| signal peptide protein [Herbasp...   125   6e-31
gi|300309368|ref|YP_003773460.1| hypothetical protein Hsero_0022...   117   2e-28
gi|300309369|ref|YP_003773461.1| hypothetical protein Hsero_0023...   116   4e-28

>gi|300309374|ref|YP_003773466.1| hypothetical protein Hsero_0028
           [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  131 bits (330), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 63/82 (76%), Positives = 68/82 (82%)

Query: 2   EFLVTVPNSGGGRSHSFIWETEGQGTLDTPAIKIELTTGHHDQDSNAQQTTLNDTQALQL 61
           EFL T PN GGGRSHSFIWETEGQGTLDTPAIKIELTTGHHD++SNAQ T ++D QALQL
Sbjct: 244 EFLATTPNRGGGRSHSFIWETEGQGTLDTPAIKIELTTGHHDKNSNAQATRMSDAQALQL 303

Query: 62  WDAVLTSFRLRPTQVAPASTTS 83
           WD VL SFRLRP     AS+ S
Sbjct: 304 WDEVLNSFRLRPAIPPQASSPS 325


>gi|300309371|ref|YP_003773463.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 352

 Score =  125 bits (314), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 63/73 (86%)

Query: 2   EFLVTVPNSGGGRSHSFIWETEGQGTLDTPAIKIELTTGHHDQDSNAQQTTLNDTQALQL 61
           EFLV+ PNSGG R HSFIWETEG+GTLDTPA+KIEL TGHHD+DSN Q+T L+D QA+QL
Sbjct: 272 EFLVSAPNSGGMRGHSFIWETEGEGTLDTPALKIELITGHHDKDSNPQKTKLSDAQAIQL 331

Query: 62  WDAVLTSFRLRPT 74
           WD VL SFRLRP 
Sbjct: 332 WDEVLNSFRLRPV 344


>gi|300309368|ref|YP_003773460.1| hypothetical protein Hsero_0022
           [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  117 bits (292), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 63/77 (81%), Gaps = 1/77 (1%)

Query: 2   EFLVTVPNSGGGRSHSFIWETEGQGTLDTPAIKIELTTGHHDQDSNAQQTTLNDTQALQL 61
           EFLVT PNSGG R HSFIWETEG+GTLD PA+KIELTTGH D++ N QQT L + +A++L
Sbjct: 277 EFLVTAPNSGGLRGHSFIWETEGEGTLDAPALKIELTTGHRDKNGNPQQTRLTNEEAMKL 336

Query: 62  WDAVLTSFRLRPTQVAP 78
           WD VL SFRLRP  VAP
Sbjct: 337 WDEVLDSFRLRPV-VAP 352


>gi|300309369|ref|YP_003773461.1| hypothetical protein Hsero_0023
           [Herbaspirillum seropedicae SmR1]
          Length = 353

 Score =  116 bits (290), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 60/73 (82%)

Query: 2   EFLVTVPNSGGGRSHSFIWETEGQGTLDTPAIKIELTTGHHDQDSNAQQTTLNDTQALQL 61
           EFLVT PNSGG R HSFIWETEG+GTLD PA+KIELTTGH D++ N QQT L + QA++L
Sbjct: 273 EFLVTAPNSGGLRGHSFIWETEGEGTLDAPALKIELTTGHRDKNGNPQQTRLTNEQAMKL 332

Query: 62  WDAVLTSFRLRPT 74
           WD VL SFRLRP 
Sbjct: 333 WDEVLDSFRLRPV 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.127    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 293,768
Number of extensions: 9772
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 4
Length of query: 87
Length of database: 1,619,870
Length adjustment: 57
Effective length of query: 30
Effective length of database: 1,349,975
Effective search space: 40499250
Effective search space used: 40499250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 123 (52.0 bits)