BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0424.p (442 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis pro... 479 e-136 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 365 e-102 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 355 3e-99 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 348 4e-97 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 339 3e-94 >gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 534 Score = 479 bits (1234), Expect = e-136, Method: Compositional matrix adjust. Identities = 251/265 (94%), Positives = 257/265 (96%) Query: 1 MITRSITAPLDRAVRVAETVAAGDLTSAIDTQGRDETSMLLRALKKMNDRLLDIVSQVRV 60 MITRSITAPLDRAVRVAETVAAGDLTSAID GRDETSMLLRALKKMNDRLLDIVSQVRV Sbjct: 209 MITRSITAPLDRAVRVAETVAAGDLTSAIDAHGRDETSMLLRALKKMNDRLLDIVSQVRV 268 Query: 61 STDTIATASSEIARGNLDLSSRTEEQAASLEETASSMEQLTATVKQNASHAGQANQLAGS 120 STDTIATASSEIARGNLDLSSRTEEQAASLEETASSMEQLTATVKQNASHAGQA+QLAGS Sbjct: 269 STDTIATASSEIARGNLDLSSRTEEQAASLEETASSMEQLTATVKQNASHAGQASQLAGS 328 Query: 121 ASDIARQGGEVVSQVVDTMGAIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 180 ASDIARQGGEVV VV+TMGAIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ Sbjct: 329 ASDIARQGGEVVGHVVETMGAIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 388 Query: 181 GRGFAVVASEVRALAQRSATAAHEIKGLIADSVARVGNGSRLVEQAGRTMQDVVQSVQRV 240 GRGFAVVA+EVRALAQRSATAAHEIK LIADSVARVGNGS+LVEQAGRTM +VVQSVQRV Sbjct: 389 GRGFAVVAAEVRALAQRSATAAHEIKALIADSVARVGNGSKLVEQAGRTMHEVVQSVQRV 448 Query: 241 GAVVTEISAAGQEQSAGIEQVNLAI 265 G VV EIS+AGQEQSAGIEQVNLAI Sbjct: 449 GEVVNEISSAGQEQSAGIEQVNLAI 473 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 365 bits (938), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/265 (75%), Positives = 224/265 (84%) Query: 1 MITRSITAPLDRAVRVAETVAAGDLTSAIDTQGRDETSMLLRALKKMNDRLLDIVSQVRV 60 ++TRSIT PL++AV +AETVAAGDLTS ID+ RDET LL ALK MN LLDIV +VR+ Sbjct: 207 LLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRDETGKLLAALKTMNGNLLDIVGRVRM 266 Query: 61 STDTIATASSEIARGNLDLSSRTEEQAASLEETASSMEQLTATVKQNASHAGQANQLAGS 120 T+TI TAS EIA GNLDLS+RTE QA SLEETAS+MEQLT+TVKQNA +A QAN+LA S Sbjct: 267 GTETINTASREIATGNLDLSARTEAQAGSLEETASAMEQLTSTVKQNADNARQANELAAS 326 Query: 121 ASDIARQGGEVVSQVVDTMGAIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 180 AS +A QGG VV QVV TMGAI ASS+KI DIIGVIDGIAFQTNILALNAAVEAARAGEQ Sbjct: 327 ASQVATQGGAVVDQVVATMGAIHASSQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQ 386 Query: 181 GRGFAVVASEVRALAQRSATAAHEIKGLIADSVARVGNGSRLVEQAGRTMQDVVQSVQRV 240 GRGFAVVASEVR+LAQRSA+AA EIK LI DSV +V +GSRLV +AG TMQ+VVQSV RV Sbjct: 387 GRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARV 446 Query: 241 GAVVTEISAAGQEQSAGIEQVNLAI 265 AVV EI+ A QEQS GIEQVNLAI Sbjct: 447 TAVVREITLASQEQSDGIEQVNLAI 471 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 355 bits (912), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 195/266 (73%), Positives = 224/266 (84%) Query: 1 MITRSITAPLDRAVRVAETVAAGDLTSAIDTQGRDETSMLLRALKKMNDRLLDIVSQVRV 60 ++R I PL+ AV VA+ VA GDLT+ I+ G+DET LL ALK MND L+ IV QVR+ Sbjct: 210 WVSRLIARPLEEAVSVAQRVAGGDLTTRIEPAGKDETGQLLVALKSMNDSLVGIVGQVRM 269 Query: 61 STDTIATASSEIARGNLDLSSRTEEQAASLEETASSMEQLTATVKQNASHAGQANQLAGS 120 T TI TAS+EIA GNLDLSSRTEEQA+SLEETAS+ME+LT+TVKQNA +A QANQLA S Sbjct: 270 GTQTITTASTEIASGNLDLSSRTEEQASSLEETASAMEELTSTVKQNADNARQANQLAVS 329 Query: 121 ASDIARQGGEVVSQVVDTMGAIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 180 AS++A QGG VV+QVVDTMG+I+ASS+KI DIIGVIDGIAFQTNILALNAAVEAARAGEQ Sbjct: 330 ASEVASQGGAVVNQVVDTMGSINASSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQ 389 Query: 181 GRGFAVVASEVRALAQRSATAAHEIKGLIADSVARVGNGSRLVEQAGRTMQDVVQSVQRV 240 GRGFAVVASEVR+LAQRSA AA EIK LI SVA+V GS+LVE+AG TM +VVQSV+RV Sbjct: 390 GRGFAVVASEVRSLAQRSAGAAKEIKELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRV 449 Query: 241 GAVVTEISAAGQEQSAGIEQVNLAIA 266 +V EIS+A QEQS GIEQVNLAIA Sbjct: 450 TDIVGEISSASQEQSEGIEQVNLAIA 475 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 348 bits (894), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 192/265 (72%), Positives = 217/265 (81%) Query: 1 MITRSITAPLDRAVRVAETVAAGDLTSAIDTQGRDETSMLLRALKKMNDRLLDIVSQVRV 60 +T IT PL RAV V+ VA GDL+S I RDET LL++LK MN L IVS VR Sbjct: 210 YLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRS 269 Query: 61 STDTIATASSEIARGNLDLSSRTEEQAASLEETASSMEQLTATVKQNASHAGQANQLAGS 120 TDTI+TASSEIA GNLDLSSRTE+QA+SL ETAS+ME+L +TV+QNA +A QA+QLA S Sbjct: 270 GTDTISTASSEIAAGNLDLSSRTEQQASSLAETASAMEELISTVRQNADNARQASQLANS 329 Query: 121 ASDIARQGGEVVSQVVDTMGAIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 180 AS +A QGG VVSQVVDTMGAI+ASS+KIVDII VIDGIAFQTNILALNAAVEAARAGEQ Sbjct: 330 ASAVAEQGGGVVSQVVDTMGAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQ 389 Query: 181 GRGFAVVASEVRALAQRSATAAHEIKGLIADSVARVGNGSRLVEQAGRTMQDVVQSVQRV 240 GRGFAVVASEVR LAQRSA+AA EIK LI DSV +V +GSRLVEQAG TMQ+VV SV+RV Sbjct: 390 GRGFAVVASEVRTLAQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRV 449 Query: 241 GAVVTEISAAGQEQSAGIEQVNLAI 265 +V EISAA EQ+ GIEQ+NLAI Sbjct: 450 TDIVAEISAASTEQTHGIEQINLAI 474 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 339 bits (869), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 188/265 (70%), Positives = 210/265 (79%) Query: 1 MITRSITAPLDRAVRVAETVAAGDLTSAIDTQGRDETSMLLRALKKMNDRLLDIVSQVRV 60 M+ R+++ PL+ AV VAE VA GDLT I DET ML+ +L+ MND L IV +VR Sbjct: 210 MVARAVSRPLNEAVAVAERVAQGDLTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRT 269 Query: 61 STDTIATASSEIARGNLDLSSRTEEQAASLEETASSMEQLTATVKQNASHAGQANQLAGS 120 TDTI TAS EIA GNLDLSSRTEEQA SLEETAS+ME+LTATVKQNA +A QANQLA S Sbjct: 270 GTDTITTASQEIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQNADNARQANQLAAS 329 Query: 121 ASDIARQGGEVVSQVVDTMGAIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 180 ASDIA QGG VV QVV TM I SS +I DII VIDGIAFQTNILALNAAVEAARAGEQ Sbjct: 330 ASDIATQGGAVVGQVVQTMEGITESSNRIADIISVIDGIAFQTNILALNAAVEAARAGEQ 389 Query: 181 GRGFAVVASEVRALAQRSATAAHEIKGLIADSVARVGNGSRLVEQAGRTMQDVVQSVQRV 240 GRGFAVVASEVR+LAQRSA+AA EIK LI DSV +VG GS+LVE+AG TM +VV SV+RV Sbjct: 390 GRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRV 449 Query: 241 GAVVTEISAAGQEQSAGIEQVNLAI 265 VV EISAA EQS GIE++N AI Sbjct: 450 TDVVAEISAASNEQSTGIEEINRAI 474 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.129 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 950,664 Number of extensions: 29939 Number of successful extensions: 433 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 329 Number of HSP's successfully gapped: 71 Length of query: 442 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 354 Effective length of database: 1,203,190 Effective search space: 425929260 Effective search space used: 425929260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)