BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0423.p (212 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis pro... 354 3e-99 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 86 2e-18 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 80 2e-16 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 77 1e-15 >gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 534 Score = 354 bits (909), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 170/185 (91%), Positives = 180/185 (97%) Query: 1 MKLSNVTIRARLWLGFGLLMILMLAMAASGIARLGQLNGQMKDVIHDKYPKTVVAGDIVD 60 M+LSNVTIR RLWLGFGLLM+LMLAMAASGIARLGQLN QMKDVIHDKYPKTVVAGDIVD Sbjct: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNAQMKDVIHDKYPKTVVAGDIVD 60 Query: 61 QLNLIARSVRNILLLKREPQIKSEYDRITGADRAIREDLAQLEKLLTDDDSRSALKKLVT 120 QLNLIARSVRNILLLKREPQIKSEY+RI+GADRAIREDLAQL+KLLTD DSR+AL LVT Sbjct: 61 QLNLIARSVRNILLLKREPQIKSEYERISGADRAIREDLAQLDKLLTDGDSRAALTTLVT 120 Query: 121 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMSAADALIKQQHDMMKSAGDE 180 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATM+AADALI+QQH+MMK+AGDE Sbjct: 121 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMNAADALIRQQHEMMKTAGDE 180 Query: 181 VESNY 185 VESNY Sbjct: 181 VESNY 185 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 85.9 bits (211), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 104/194 (53%) Query: 1 MKLSNVTIRARLWLGFGLLMILMLAMAASGIARLGQLNGQMKDVIHDKYPKTVVAGDIVD 60 M+ +N++I RL + F +L++++ + A G+ARL +N + V++D+Y K + I Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 QLNLIARSVRNILLLKREPQIKSEYDRITGADRAIREDLAQLEKLLTDDDSRSALKKLVT 120 +++ +A S+RN LL+ QI +E I + +L +L+ + ++++ L K+ Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTE 120 Query: 121 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMSAADALIKQQHDMMKSAGDE 180 + +Y R ++ + G K+ AI +++ E+ P+Q S D L Q +M + D+ Sbjct: 121 TRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQ 180 Query: 181 VESNYVQARTLLLV 194 E+ Y R ++++ Sbjct: 181 AEAAYETTRMIMVI 194 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 2/175 (1%) Query: 1 MKLSNVTIRARLWLGFGLLMILMLAMAASGIARLGQLNGQMKDVIHDKYPKTVVAGDIVD 60 MK+S++ I RL F L+++M +A G+ L ++ ++++D+Y K + I D Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 QLNLIARSVRNILLLKREPQIKSEY-DRITGADRAIREDLAQLEKLLTDDDSRSALKKLV 119 ++N ARS+RN ++ R P+ + +Y DR+ + E LA++EK L L Sbjct: 62 KVNTGARSLRN-AIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALK 120 Query: 120 TAQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMSAADALIKQQHDMM 174 A+ Y ++R KV+ ++ Q ++ A L D+ PVQ +A ++ Q +M Sbjct: 121 QARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLM 175 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 77.0 bits (188), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 97/197 (49%) Query: 1 MKLSNVTIRARLWLGFGLLMILMLAMAASGIARLGQLNGQMKDVIHDKYPKTVVAGDIVD 60 MKL ++ I RL + F +L+ +M + G+ L ++ ++ D+Y K +A +I D Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 QLNLIARSVRNILLLKREPQIKSEYDRITGADRAIREDLAQLEKLLTDDDSRSALKKLVT 120 +N AR++RN LL + + DR E L ++EK+L+ R + + Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 121 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMSAADALIKQQHDMMKSAGDE 180 A++AY RDK+ +++Q KE A+++L +V P Q D + Q +M+ + E Sbjct: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTE 180 Query: 181 VESNYVQARTLLLVLAA 197 A ++L L+A Sbjct: 181 GRDTTQSAIAMMLGLSA 197 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 441,238 Number of extensions: 14541 Number of successful extensions: 76 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 77 Number of HSP's successfully gapped: 10 Length of query: 212 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 131 Effective length of database: 1,236,335 Effective search space: 161959885 Effective search space used: 161959885 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)