BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0413.p
         (337 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum serope...   393   e-110
gi|300309898|ref|YP_003773990.1| major facilitator superfamily p...   147   1e-36

>gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 412

 Score =  393 bits (1009), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/262 (87%), Positives = 241/262 (91%), Gaps = 7/262 (2%)

Query: 1   MNSIPKTHT----AAPAAASSPAHGLSTGLIGLLATGAGLAVASLYYSQPMLGVLADDIG 56
           MN+I KTHT    A P A+   AHGLS+ LI LLA+GAGLAVASLYYSQPMLGVLADDIG
Sbjct: 1   MNTIQKTHTGHTGAQPGAS---AHGLSSSLILLLASGAGLAVASLYYSQPMLGVLADDIG 57

Query: 57  ASERAVGMVPMSTQLGYALGILLLAPLGDRYDRRRIILIKAAILTVALLLAGAASGIATL 116
           ASERAVGMVPMSTQLGYALGILLLAPLGDRYDRRRIILIKAAILT ALLLAGAASG+  L
Sbjct: 58  ASERAVGMVPMSTQLGYALGILLLAPLGDRYDRRRIILIKAAILTAALLLAGAASGVGAL 117

Query: 117 LAASLAIGLTATLAQDIVPAAATLAPEQHRGRIVGTVMTGLLLGILLSRVVSGFVAEHFG 176
           LAASLA+GLTATLAQDIVPAAA+LAPEQ RGR+VGTVMTGLLLGILLSRVVSGFVAEHFG
Sbjct: 118 LAASLAVGLTATLAQDIVPAAASLAPEQSRGRVVGTVMTGLLLGILLSRVVSGFVAEHFG 177

Query: 177 WRAMFVGASASIALIGLAAWRGLPRFHPTTHLSYGALLGSLGTLVRKHGALRRAALAQGL 236
           WRAMFV A+ SIALIGLAAWRGLPRFHPTTHLSYGAL+ SL TL +KHGALRRAALAQGL
Sbjct: 178 WRAMFVAAAVSIALIGLAAWRGLPRFHPTTHLSYGALMASLATLFKKHGALRRAALAQGL 237

Query: 237 LSVGFSAFWSTLAVMLHGAPFH 258
           LSVGFSAFWSTLAVMLHGAPFH
Sbjct: 238 LSVGFSAFWSTLAVMLHGAPFH 259


>gi|300309898|ref|YP_003773990.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 392

 Score =  147 bits (371), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/277 (40%), Positives = 157/277 (56%), Gaps = 4/277 (1%)

Query: 14  AASSPAHGLSTGLIGLLATGAGLAVASLYYSQPMLGVLADDIGASERAVGMVPMSTQLGY 73
           A SSP   LS GL+ L A  +GL+VA++YY+QP+L  L+DD   S+ AVG V  +TQLG 
Sbjct: 2   ATSSPP--LSQGLLLLFAIASGLSVANVYYAQPLLDALSDDFKISQAAVGGVVTATQLGC 59

Query: 74  ALGILLLAPLGDRYDRRRIILIKAAILTVALLLAGAASGIATLLAASLAIGLTAT-LAQD 132
           AL +LLL PLGD+  R+ ++ I+   L  AL+  G A     LLA  LA+GL  T + Q 
Sbjct: 60  ALALLLLVPLGDKVPRKMLMGIQLLALVCALVTVGLARSSYVLLAGMLAVGLLGTAMTQG 119

Query: 133 IVPAAATLAPEQHRGRIVGTVMTGLLLGILLSRVVSGFVAEHFGWRAMFVGASASIALIG 192
           ++  AA+ A E  RGR+VG   +G+ +G+LLSRV SG V++  GWR +++ A+  +  + 
Sbjct: 120 LIAYAASAAGEDERGRVVGAAQSGVFIGLLLSRVFSGAVSDVTGWRGVYLCAAIMMLCLA 179

Query: 193 LAAWRGLPRFHPTTH-LSYGALLGSLGTLVRKHGALRRAALAQGLLSVGFSAFWSTLAVM 251
              W+ LP        L Y  L+ S+  L+R    L+   +   L+   F+ FWS L + 
Sbjct: 180 WPLWKRLPAIPVQADGLRYLTLIKSMWCLLRDDKVLQVRGVLAMLMFAAFNVFWSALVLP 239

Query: 252 LHGAPFHLGSAAAGAFGLAGAAGALAAPLGPRXDAPG 288
           L  +P+H      GAFGL G  GALAA    R    G
Sbjct: 240 LSASPYHFSHTVIGAFGLVGVIGALAASKAGRWSDQG 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 742,467
Number of extensions: 23208
Number of successful extensions: 236
Number of sequences better than 1.0e-08: 11
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 11
Length of query: 337
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,212,660
Effective search space: 304377660
Effective search space used: 304377660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)