BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0412.p (324 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309384|ref|YP_003773476.1| transcription regulator protein... 519 e-148 gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 171 1e-43 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 158 5e-40 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 149 3e-37 gi|300311458|ref|YP_003775550.1| LysR family transcription regul... 141 8e-35 >gi|300309384|ref|YP_003773476.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 519 bits (1337), Expect = e-148, Method: Compositional matrix adjust. Identities = 263/299 (87%), Positives = 283/299 (94%) Query: 23 IQTFVRIVEAGSLSAAAAQLATTQPTVSRRLQALERSLGVRLLQRSTHAMKMTEDGERCY 82 +QTFVRIVEAGSLSAAAAQLATTQPT+SRRLQ LERSLGVRLLQRSTHAMKMTEDGERCY Sbjct: 1 MQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDGERCY 60 Query: 83 ERAKELLAGWDEFESELRGARQHAEGTLRVVVPHAFGQKQLIAPLLQFMQRHPRITVEWL 142 ERAKELLAGWD+FE+ELRGARQHAEG LRVVVPHAFGQKQLI PL QFM++HPRITVEWL Sbjct: 61 ERAKELLAGWDDFENELRGARQHAEGALRVVVPHAFGQKQLIGPLAQFMRQHPRITVEWL 120 Query: 143 LHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPALLEGRALPRQPEELAD 202 LHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAP++L GR +PR P +LA+ Sbjct: 121 LHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPSVLAGRPMPRHPADLAE 180 Query: 203 FPWIAIPAFYRREITLTHATSGEQRQVAFRPQLVTDSLYALRNIAIEGMGVAVGSSWVLA 262 PWIAIPAFYRRE+TLTHA +GEQRQV+FRPQLVTDSLYALRN A+ G+GVAVGSSWVL Sbjct: 181 LPWIAIPAFYRREVTLTHAHTGEQRQVSFRPQLVTDSLYALRNTAVAGLGVAVGSSWVLN 240 Query: 263 EDVAAGRLVQLLPEWEPAPLPVSLMYPYARFYPARLRHFIDTMKEAMPSVVHQAVGRGA 321 EDVAAGRLVQLLP+W+PAPLPV L+YPYARF PARLRHFIDTMKEAMP+VVHQAVG GA Sbjct: 241 EDVAAGRLVQLLPDWQPAPLPVCLLYPYARFQPARLRHFIDTMKEAMPAVVHQAVGWGA 299 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 171 bits (432), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 158/307 (51%), Gaps = 6/307 (1%) Query: 18 DRIELIQTFVRIVEAGSLSAAAAQLATTQPTVSRRLQALERSLGVRLLQRSTHAMKMTED 77 DR + +Q F +V+A S + AA L + TV+ +Q LE L VRLL R+T + +T D Sbjct: 2 DRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTPD 61 Query: 78 GERCYERAKELLAGWDEFESELRGARQHAEGTLRVVVPHAFGQKQLIAPLLQFMQRHPRI 137 G YER +LA DE E R + +G LR+ VP + G+ L+ L F R+P I Sbjct: 62 GAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPDI 121 Query: 138 TVEWLLHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPALLEGRALPRQP 197 + + DR D + + +DC I++GE+ D S+VA + +T APA LE +P Sbjct: 122 ELMMGMGDRPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHTI 181 Query: 198 EELADFPWIAIPAFYR---REITLTHATSGEQRQVAFRPQLVTDSLYALRNIAIEGMGVA 254 E+L A+ F R I G R+V +L + A A++G G+ Sbjct: 182 EDLQQHK--AVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMV 239 Query: 255 VGSSWVLAEDVAAGRLVQLLPEWEPAPLPVSLMYPYARFYPARLRHFIDTMKEAMPSV-V 313 +++ + GRLV++L +W+PAP+P+S++Y + R ++R F+D + E + + Sbjct: 240 QAPLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAELFATCPL 299 Query: 314 HQAVGRG 320 H+A G Sbjct: 300 HKACTMG 306 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 158 bits (400), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 157/295 (53%), Gaps = 9/295 (3%) Query: 18 DRIELIQTFVRIVEAGSLSAAAAQLATTQPTVSRRLQALERSLGVRLLQRSTHAMKMTED 77 D+++ +QTFV +VE+GS AA ++P VSR++ LE+ LG+RLL R+T + +T++ Sbjct: 2 DKLQAMQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDE 61 Query: 78 GERCYERAKELLAGWDEFESELRGARQHAEGTLRVVVPHAFGQKQLIAPLL-QFMQRHPR 136 G + R KELL + ESE+ A G LR+ P FG +QL APL +F ++HP Sbjct: 62 GRVYFARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQL-APLWGKFTEQHPL 120 Query: 137 ITVEWLLHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPALLEGRALPRQ 196 IT+ L DR D + +G D AI++ + D +VA LA V + AP L P Sbjct: 121 ITLNITLSDRTIDLLEEGFDMAIRISALGDSRMVARPLAPVRMIACAAPEFLARHGTPGT 180 Query: 197 PEELADFPWIAIPAFYR---REITLTHATSGEQRQVAFRPQLVTDSLYALRNIAIEGMGV 253 P EL D+P+I+ YR + + H G+ QV R + ++ R +AI G G+ Sbjct: 181 PAELRDYPFISYS--YRAGGDDWSFRH-VHGDTCQVRVRSTVYVNNGATCRAMAIAGQGI 237 Query: 254 AVGSSWVLAEDVAAGRLVQLLPEWEPAP-LPVSLMYPYARFYPARLRHFIDTMKE 307 A+ +++ + AG+LV+L W L V +YP P +++ D + E Sbjct: 238 AIQPDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLIE 292 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 149 bits (376), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 155/294 (52%), Gaps = 7/294 (2%) Query: 18 DRIELIQTFVRIVEAGSLSAAAAQLATTQPTVSRRLQALERSLGVRLLQRSTHAMKMTED 77 D+ + I TF + GSLSAAA + RRL ALE LGV+LLQR+T + +T + Sbjct: 2 DQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNE 61 Query: 78 GERCYERAKELLAGWDEFESELRGARQHAEGTLRVVVPHAFGQKQLIAPLL-QFMQRHPR 136 G E + +LA ++ ES + A G L + P FG +Q +APLL F+ H Sbjct: 62 GAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFG-RQHVAPLLPSFLAEHRD 120 Query: 137 ITVEWLLHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPALLEGRALPRQ 196 +T+ L+DR AD I +GID AI++ + D ++V++ LAE R+ V APA L P+ Sbjct: 121 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQS 180 Query: 197 PEELADFPWIAIPA-FYRREITLTHATSGEQRQVAFRPQLVTDSLYALRNIAIEGMGVAV 255 P+EL +A+ + +R TL SG+ +V + L N A+ G G+A Sbjct: 181 PDELMRHNCLAMSSEGSQRGWTLRQ--SGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAW 238 Query: 256 GSSWVLAEDVAAGRLVQLLPEW-EPAPLPVSLMYPYARFYPARLRHFIDTMKEA 308 S W + + AG LV +L ++ PAP + ++ R P R+R F+D ++ A Sbjct: 239 RSMWEVGAAIEAGELVTVLDKFAAPAP-SIYAVFAQRRHLPLRIRAFVDFLRHA 291 >gi|300311458|ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 141 bits (355), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 88/294 (29%), Positives = 152/294 (51%), Gaps = 2/294 (0%) Query: 18 DRIELIQTFVRIVEAGSLSAAAAQLATTQPTVSRRLQALERSLGVRLLQRSTHAMKMTED 77 DR++ ++ F ++VE GS AA L + +R + LE LG RLL RST + +TE Sbjct: 2 DRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTEA 61 Query: 78 GERCYERAKELLAGWDEFESELRGARQHAEGTLRVVVPHAFGQKQLIAPLLQFMQRHPRI 137 G+ ER + +LA D+ E+ + + GTL + FGQ QL L + Q +P + Sbjct: 62 GQAYLERVRMILAEVDDAEALVSLETKRPAGTLAIYCNAGFGQSQLGEMLSAYSQAYPEV 121 Query: 138 TVEWLLHDRAADFISQGIDCA-IQVGEVNDPSVVAIHLAEVPRMTVVAPALLEGRALPRQ 196 ++ L +R+ D + +GID + D S++ L + +PA + + P Q Sbjct: 122 ALDISLSERSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCTSPAYIARQGAPEQ 181 Query: 197 PEELADFPWIAIPAFYRREITLTHATSGEQRQVAFRPQLVTDSLYALRNIAIEGMGVAVG 256 PE+L+ + Y R + T+G V ++V++S LR++A+ GMG+ + Sbjct: 182 PEDLSRHNCLNFSHEYLRHHWHVN-TNGGVLDVPIVSKVVSNSGVLLRDLALAGMGIVLR 240 Query: 257 SSWVLAEDVAAGRLVQLLPEWEPAPLPVSLMYPYARFYPARLRHFIDTMKEAMP 310 S+ L +D+ +GRLVQ+LP ++ + +S++YP R A++R F + + P Sbjct: 241 PSYSLGDDLRSGRLVQVLPGFDMGQVIMSMVYPSRRLLSAKVRSFAEFISARFP 294 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,025,385 Number of extensions: 42911 Number of successful extensions: 268 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 220 Number of HSP's successfully gapped: 60 Length of query: 324 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 239 Effective length of database: 1,217,395 Effective search space: 290957405 Effective search space used: 290957405 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)