BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0409.p (395 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis tra... 619 e-178 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 271 9e-74 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 215 6e-57 gi|300312818|ref|YP_003776910.1| methyl-accepting chemotaxis pro... 206 3e-54 gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 190 2e-49 >gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 619 bits (1596), Expect = e-178, Method: Compositional matrix adjust. Identities = 313/376 (83%), Positives = 331/376 (88%) Query: 1 MTVGRKLGLAFLSMVVVSLAVSSLSLFNFNRLEGASAMNVHTYEVMGAADDMLINMVNIE 60 MTVGRKLGLAFL +VVV+L SSLSL NFNRLE ASAMN+HTY+VMG ADDML+NMVNIE Sbjct: 5 MTVGRKLGLAFLCVVVVALVGSSLSLLNFNRLEDASAMNIHTYQVMGKADDMLLNMVNIE 64 Query: 61 TGIRGYVASGNEAFLDPYLGGRKAFSKAFDQAKALTADNPVQQKRLTEMLELTNKIEEVD 120 TGIRGYVASGNEAFLDPY GGRK F AFD AK+LTADNPVQQKRL EM EL+NKIEE+D Sbjct: 65 TGIRGYVASGNEAFLDPYKGGRKDFKVAFDDAKSLTADNPVQQKRLAEMQELSNKIEEID 124 Query: 121 QTLIKLRKQANASASTQDLQTYFGATHDKVFMDRFRGLQSEFVKAEESLLKERGEQVREL 180 Q LIKLRK+ANAS S Q LQTYFGATHDK+FMDRFR +Q EFV AEESLLKERGE VR L Sbjct: 125 QNLIKLRKEANASGSQQALQTYFGATHDKIFMDRFRVVQKEFVDAEESLLKERGELVRSL 184 Query: 181 SSATFAVLIGGGALTVLLAIVAGLAITRSILKALGGEPAAAALVAQHIAAGDLTVPVPLK 240 S +T V+I GALTVLLAI AGL ITRSI+ ALGGEP AAA VAQ IAAGDLTV VPLK Sbjct: 185 SKSTLIVMIAAGALTVLLAIGAGLLITRSIINALGGEPGAAADVAQQIAAGDLTVAVPLK 244 Query: 241 HNDRSSLMASLASMREQLTTIVRGIQTSGESISVAAGEIATGNTDLSQRTEQQAASLEET 300 ND SLMASL SMREQLTTIVRGIQTSGESISVAA EIATGNTDLSQRTE+QAASLEET Sbjct: 245 PNDSHSLMASLGSMREQLTTIVRGIQTSGESISVAANEIATGNTDLSQRTEEQAASLEET 304 Query: 301 ASSMEELTSTVRQNSDNARQGNVVAEDASALALKGGEVVGRVISTMNEISDSSSKVSEII 360 ASSMEELTSTVRQNSDNARQ N +AE+AS LA KGGEVV RVI TMNEISDSSSKVS+II Sbjct: 305 ASSMEELTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVIDTMNEISDSSSKVSDII 364 Query: 361 TVIEGIAFQTNILALN 376 TVIEGIAFQTNILALN Sbjct: 365 TVIEGIAFQTNILALN 380 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 271 bits (692), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 162/379 (42%), Positives = 233/379 (61%), Gaps = 7/379 (1%) Query: 1 MTVGRKLGLAFLSMVVVSLAVSSLSLFNFNRLEGASAMNVHTYEVMGAADDMLINMVNIE 60 + +G +L + F + + + + S++ NF RL A+ +NVHTYEV M +++NIE Sbjct: 6 LKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVHTYEVRAQLRAMAESLINIE 65 Query: 61 TGIRGYVASGNEAFLDPYLGGRKAFSKAFDQAKALTADNPVQQKRLTEMLELTNK-IEEV 119 TG RG+ SG +A L+PY G F A ++ + LT+DN +QQ+RL E+ + + ++ Sbjct: 66 TGQRGFSLSGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQRLQELSDSEQRWLKSA 125 Query: 120 DQTLIKLRKQANASASTQDLQTYF-GATHDKVFMDRFRGLQSEFVKAEESLLKERGEQVR 178 I+LR+ F A K MD R L + + E +LL ER E+ Sbjct: 126 IDPAIELRRAVREGREQMAAVVAFEQAGKGKSQMDSMRVLLDDLDRTESALLGERAEEAA 185 Query: 179 ELSSATFAVLIGGGALTVLLAIVAGLAITRSILKALGGEPAAAALVAQHIAAGDLTVPVP 238 L S T LIGGGA+ ++LA++ + +I + L A A +A+ +A+GDLT + Sbjct: 186 ALRSVTSTTLIGGGAIALMLAVLLAWWLANNITRPL----ALAVQLARRVASGDLTARIE 241 Query: 239 LKHNDRS-SLMASLASMREQLTTIVRGIQTSGESISVAAGEIATGNTDLSQRTEQQAASL 297 ++ D + +L+ +L M E L IV G++ E I+ A+ EIATGN DLS RTEQQA+SL Sbjct: 242 VRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASSL 301 Query: 298 EETASSMEELTSTVRQNSDNARQGNVVAEDASALALKGGEVVGRVISTMNEISDSSSKVS 357 EETASSMEELTSTV+QN+ NAR+ N +A+ AS +A GG VV RV+ TM EI+DSS K+ Sbjct: 302 EETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKIV 361 Query: 358 EIITVIEGIAFQTNILALN 376 +II+VI+GIAFQTNILALN Sbjct: 362 DIISVIDGIAFQTNILALN 380 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 215 bits (547), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 118/199 (59%), Positives = 145/199 (72%), Gaps = 4/199 (2%) Query: 178 RELSSATFAVLIGGGALTVLLAIVAGLAITRSILKALGGEPAAAALVAQHIAAGDLTVPV 237 R + + T+ ++ G +VLLA+ A I RS+L LGGEPA A +A IA G+L V + Sbjct: 187 RSILTTTWTLVAG----SVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNLAVSI 242 Query: 238 PLKHNDRSSLMASLASMREQLTTIVRGIQTSGESISVAAGEIATGNTDLSQRTEQQAASL 297 PL D+ SLMASL +MR QLT IV GI+ S ESIS AA +IA GN DLS+RTE+QAASL Sbjct: 243 PLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQAASL 302 Query: 298 EETASSMEELTSTVRQNSDNARQGNVVAEDASALALKGGEVVGRVISTMNEISDSSSKVS 357 EETASSMEE+TSTV QN+ NA QG+ +A AS A KGGEVV RV+ TM +IS S+ K++ Sbjct: 303 EETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAYKIT 362 Query: 358 EIITVIEGIAFQTNILALN 376 EII +EGIAFQTNILALN Sbjct: 363 EIIATVEGIAFQTNILALN 381 >gi|300312818|ref|YP_003776910.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 524 Score = 206 bits (524), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 139/379 (36%), Positives = 217/379 (57%), Gaps = 16/379 (4%) Query: 1 MTVGRKL-GLAFLSMVVVSLAVSSLSLFNF-NRLEGASAMNVHTYEVMGAADDMLINMVN 58 MTVG L L+F+S + V+++ S+ N +R + + + A + N + Sbjct: 7 MTVGMALVCLSFISALCVAMS----SMLNIRDRFD---VFLMRDQATLNAVTSLYTNGLQ 59 Query: 59 IETGIRGYVAS-GNEAFLDPYLGGRKAFSKAFDQAKALTADNPVQQKRLTEMLELTNKIE 117 + +R V N+A RK FS A + LT D+ +++ E+ L+ + Sbjct: 60 MGQALRNIVLDPKNQAAYKNLDDSRKGFSDALAASAELTRDDIAYFQKIEEIAGLSQQQL 119 Query: 118 EVDQTLIKLRKQANASASTQDLQTYFGATHDKVFMDRFRGLQSEFVKAEESLLKERGEQV 177 ++ + +++L +AS D T + R R +K + + + + E++ Sbjct: 120 QLQKKIVEL------AASDPDKAIKALTTEETPVWRRIREQVLALIKTKNADVGKSKEEM 173 Query: 178 RELSSATFAVLIGGGALTVLLAIVAGLAITRSILKALGGEPAAAALVAQHIAAGDLTVPV 237 S + I GA+ L +V G + R+++ LGGEPA A V+Q I+ GD + V Sbjct: 174 DAFSKRMLMLSIALGAVAALTGLVIGYWLIRNVMILLGGEPAYAVAVSQRISGGDFSYDV 233 Query: 238 PLKHNDRSSLMASLASMREQLTTIVRGIQTSGESISVAAGEIATGNTDLSQRTEQQAASL 297 + +NDRSSL+ S+ +M+E+L ++ GI++S IS+A EIA GN DLS RTE+QA+SL Sbjct: 234 DVTNNDRSSLLFSMRAMQERLIDMISGIRSSANRISIATNEIAKGNMDLSSRTEEQASSL 293 Query: 298 EETASSMEELTSTVRQNSDNARQGNVVAEDASALALKGGEVVGRVISTMNEISDSSSKVS 357 EETAS+MEELTS VRQN+ NA Q NV+A A+ +A++GG++V V+ TMN+I S+ KV Sbjct: 294 EETASAMEELTSVVRQNAGNADQANVLALSATQVAVEGGKLVKDVVETMNQIETSAKKVV 353 Query: 358 EIITVIEGIAFQTNILALN 376 +II+VI+GIAFQTNILALN Sbjct: 354 DIISVIDGIAFQTNILALN 372 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 190 bits (483), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 101/171 (59%), Positives = 130/171 (76%) Query: 206 ITRSILKALGGEPAAAALVAQHIAAGDLTVPVPLKHNDRSSLMASLASMREQLTTIVRGI 265 I RSIL+ LG EP+ A VA+ IA+GDLT V ++ D SSLMAS+ MR QL I GI Sbjct: 213 IARSILRQLGAEPSEAQAVARDIASGDLTATVRVREGDSSSLMASIEQMRYQLNVIAHGI 272 Query: 266 QTSGESISVAAGEIATGNTDLSQRTEQQAASLEETASSMEELTSTVRQNSDNARQGNVVA 325 +++ E+ISVA+G+IA GN DLSQRTE+QAASLEETA+SMEELT+TVRQN+ +A + ++ Sbjct: 273 KSAAETISVASGQIAQGNFDLSQRTEEQAASLEETAASMEELTTTVRQNTQHASEALRLS 332 Query: 326 EDASALALKGGEVVGRVISTMNEISDSSSKVSEIITVIEGIAFQTNILALN 376 A+ A G + RV+ TM+ I+ SSSK+S+II+VIEGIAFQTNILALN Sbjct: 333 GGATETAAAGSQAFDRVVQTMDRITASSSKMSDIISVIEGIAFQTNILALN 383 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.127 0.336 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 906,400 Number of extensions: 31903 Number of successful extensions: 403 Number of sequences better than 1.0e-08: 68 Number of HSP's gapped: 344 Number of HSP's successfully gapped: 68 Length of query: 395 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 308 Effective length of database: 1,207,925 Effective search space: 372040900 Effective search space used: 372040900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)