BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0408.p (159 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis tra... 156 8e-40 gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra... 109 1e-25 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 107 4e-25 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 106 7e-25 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 85 2e-18 >gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 156 bits (394), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 114/162 (70%), Positives = 121/162 (74%), Gaps = 5/162 (3%) Query: 2 LSGERVERGTHLVGEAGGTIDEVVQAVRNVTQIMNEISAASLEQTAGIEQVNQALGQMDQ 61 LSGERVERGTHLVGEAG TI+EVVQAVRNVT IMNEI+AAS EQT GIEQVNQAL QMDQ Sbjct: 422 LSGERVERGTHLVGEAGQTINEVVQAVRNVTDIMNEITAASSEQTTGIEQVNQALSQMDQ 481 Query: 62 VTQQNAALVEQAAAAAQAMSEQATELRSAVGIFKTAGGV-VRPVPVV-RAAAAAKPAPK- 118 VTQQNAALVEQAAAAAQAMSEQATELRSAVG+FKT GG V+P PV R A PAPK Sbjct: 482 VTQQNAALVEQAAAAAQAMSEQATELRSAVGVFKTGGGTAVQPRPVSPRPAKVVNPAPKV 541 Query: 119 -AVSRPSLPVAPARAAKAQPAAAQGPSSSYKKDAGEGDWETF 159 A +LP A A A + SS DA G+WETF Sbjct: 542 GAAKTRALPPKAAATAHTANAVKKEASSPKAADAS-GEWETF 582 >gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 109 bits (273), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 63/118 (53%), Positives = 85/118 (72%), Gaps = 2/118 (1%) Query: 3 SGERVERGTHLVGEAGGTIDEVVQAVRNVTQIMNEISAASLEQTAGIEQVNQALGQMDQV 62 S +RV+ G+ LVG+AG T+ +V+ AV+ VT IM+EISAAS EQ+AGI+QV+ A+ QMD+ Sbjct: 419 SVDRVQAGSELVGQAGDTMSDVINAVQRVTDIMSEISAASNEQSAGIDQVSHAVTQMDEA 478 Query: 63 TQQNAALVEQAAAAAQAMSEQATELRSAVGIFKT--AGGVVRPVPVVRAAAAAKPAPK 118 TQQNAALVEQA+AAA+++ +QA L V IF+ AG V+P + A KPA K Sbjct: 479 TQQNAALVEQASAAAKSLEQQAQALMQEVAIFRVNGAGPTVKPPAAAASRATVKPAAK 536 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 107 bits (268), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/157 (47%), Positives = 96/157 (61%), Gaps = 11/157 (7%) Query: 3 SGERVERGTHLVGEAGGTIDEVVQAVRNVTQIMNEISAASLEQTAGIEQVNQALGQMDQV 62 S ++V G+ LV +AG TI EVV +V+ VT +M+EISAAS EQT GIEQVNQA+ QMD+V Sbjct: 422 SVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDEV 481 Query: 63 TQQNAALVEQAAAAAQAMSEQATELRSAVGIFKTAGGVVRPVPVVRAAAAAKPAPKAVSR 122 TQQNAALVE+AA+A+Q++S QA L VG+F+ G R A A R Sbjct: 482 TQQNAALVEEAASASQSLSHQAQRLSELVGVFRLPGA-ARQQVPEVAVVATAAPAYTPRR 540 Query: 123 PSLPVAPARAAKAQPAAAQGPSSSYKKDAGEGDWETF 159 P++ A + A A A AQGP + WETF Sbjct: 541 PAVAGATSTATPA-LAVAQGP---------DEQWETF 567 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 106 bits (265), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 79/161 (49%), Positives = 104/161 (64%), Gaps = 8/161 (4%) Query: 6 RVERGTHLVGEAGGTIDEVVQAVRNVTQIMNEISAASLEQTAGIEQVNQALGQMDQVTQQ 65 +VE G+ LV EAG T+ E+V++V+ VT ++NEISAA EQ +GIEQV+QA+GQMDQVTQQ Sbjct: 426 KVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQVTQQ 485 Query: 66 NAALVEQAAAAAQAMSEQATELRSAVGIFKTAGG---VVRPVPVVRAAAAA----KPAPK 118 NAALVEQAAAA+Q++ EQA EL AV +F+ G V P P + AA+ +PA + Sbjct: 486 NAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQALEVAPEPAPASVAASRSGVRPATR 545 Query: 119 AVSRPSLPVAPARAAKAQPAAAQGPSSSYKKDAGEGDWETF 159 + PS PV P+ + A P S S A +W TF Sbjct: 546 SSRLPS-PVGPSASPSASPMHPAPASGSRLSSADADEWVTF 585 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 85.1 bits (209), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/167 (49%), Positives = 105/167 (62%), Gaps = 13/167 (7%) Query: 3 SGERVERGTHLVGEAGGTIDEVVQAVRNVTQIMNEISAASLEQTAGIEQVNQALGQMDQV 62 S +V GT LV +AG T+D VV ++ V+ I+ EISAA+ EQ+ GIEQVNQA+ QMD Sbjct: 420 SVNQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIEQVNQAIMQMDNT 479 Query: 63 TQQNAALVEQAAAAAQAMSEQATELRSAVGIFKT--AGG------VVRPV-PVVRAAAAA 113 TQQNAALVE+AAAAAQA+ +QA L VG+F+ GG V PV PV+R +AA Sbjct: 480 TQQNAALVEEAAAAAQALQDQAQRLLDLVGVFRLDEVGGSGPAPSAVAPVAPVLRKVSAA 539 Query: 114 KPAPKAV-SRPSLPVAPARAAKAQPAAAQGPSSSYKKDAGEGDWETF 159 AP+A S P+ P APA AA +S ++D E +WETF Sbjct: 540 --APRATKSLPAKPAAPAVTNAPAAPAAPALPASKREDKSE-EWETF 583 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.309 0.122 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 279,076 Number of extensions: 6310 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 61 Length of query: 159 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 81 Effective length of database: 1,250,540 Effective search space: 101293740 Effective search space used: 101293740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 127 (53.5 bits)