BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0407.p
         (500 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309385|ref|YP_003773477.1| acyl-CoA transferase [Herbaspir...   975   0.0  

>gi|300309385|ref|YP_003773477.1| acyl-CoA transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 500

 Score =  975 bits (2521), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/500 (95%), Positives = 486/500 (97%)

Query: 1   MDSQRIRQPALAGKVMSAAEAATFFHNGMTIGLSGFTRAGDAKAMPRALADRAAQEELHF 60
           MDSQRIRQPALAGKVMSAAEAATFFHNGMTIGLSGFTRAGDAKAMPRALADRAAQEELHF
Sbjct: 1   MDSQRIRQPALAGKVMSAAEAATFFHNGMTIGLSGFTRAGDAKAMPRALADRAAQEELHF 60

Query: 61  TVITGASLGNGSDGLMAEAGLLARRLPFQVDPTLRKKINAGEVMFIDQHLSETAEQLRSG 120
           TVITGASLGNGSDGLMAEAGLLARRLPFQVDPTLR+KINAGEVMFIDQHLSETAEQLRSG
Sbjct: 61  TVITGASLGNGSDGLMAEAGLLARRLPFQVDPTLRRKINAGEVMFIDQHLSETAEQLRSG 120

Query: 121 TPSRIDIAVIEAAAITEEGIVPTMSVGNSASFVEQARHIVIELNTSVPLALEGLHDIYLP 180
           TPSRIDIAVIEAAAITEEGIVPTMSVGNSASFVEQAR IVIELNTSVPLALEGLHDIYLP
Sbjct: 121 TPSRIDIAVIEAAAITEEGIVPTMSVGNSASFVEQARQIVIELNTSVPLALEGLHDIYLP 180

Query: 181 AARPERKPIPLTAAGDRIGRPTIPFDPEKVVAIVLTETPDSPSSVLPPDDETRAIARHVI 240
           AARP R+PIPLT A  RIG  TIPFDP KVVAIVLT+TPDSPSSVLPPDDETRAIA HVI
Sbjct: 181 AARPAREPIPLTVADQRIGSTTIPFDPAKVVAIVLTQTPDSPSSVLPPDDETRAIAGHVI 240

Query: 241 HFLECEVEAGRLPHTLAPLQAGIGTIANAVLHGLVESPFRNLVMYSEVLQDSAIDLLDSG 300
           HFLECEVEAGRLPHTLAPLQAGIGTIANAVLHGLVESPFRNLVMYSEVLQDSAIDLLDSG
Sbjct: 241 HFLECEVEAGRLPHTLAPLQAGIGTIANAVLHGLVESPFRNLVMYSEVLQDSAIDLLDSG 300

Query: 301 QLAFASASSITLSQAKYAHFLANLDRYRDKLVLRPQEISNHPELVRRLGIIGLNTALEFD 360
           QLAFASASSITLSQ KYAHFLAN+DRYRDK+VLRPQEISNHPELVRRLGIIGLNTALEFD
Sbjct: 301 QLAFASASSITLSQDKYAHFLANIDRYRDKVVLRPQEISNHPELVRRLGIIGLNTALEFD 360

Query: 361 IYGNVNSTHVGGTHMMNGIGGSGDFARNGQLSVFVSKSVAKDGAISSVVPMVSHVDHSEH 420
           +YGNVNSTHVGGTHMMNGIGGSGDFARNGQ+S+FVSKSVAKDGAISSVVPMVSHVDHSEH
Sbjct: 361 LYGNVNSTHVGGTHMMNGIGGSGDFARNGQISIFVSKSVAKDGAISSVVPMVSHVDHSEH 420

Query: 421 DVDVLVTEWGLADLRGLAPRERAVKVIEQCCHPDYRPQLRDYFERACRAGGHTPHLLGEA 480
           DVDVLVTEWGLADLRGLAPRERAVKVIEQCCHPDYR QLRDYFERAC+AGGHTPHLLGEA
Sbjct: 421 DVDVLVTEWGLADLRGLAPRERAVKVIEQCCHPDYRAQLRDYFERACQAGGHTPHLLGEA 480

Query: 481 FSWHQHYAQQRTMRLDQHQG 500
           FSWHQHYA+ RTMRLDQ  G
Sbjct: 481 FSWHQHYARHRTMRLDQRAG 500


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,510,682
Number of extensions: 62580
Number of successful extensions: 225
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 411
Effective length of database: 1,198,455
Effective search space: 492565005
Effective search space used: 492565005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)