BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0405.p
         (404 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309387|ref|YP_003773479.1| membrane protein [Herbaspirillu...   481   e-137

>gi|300309387|ref|YP_003773479.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 711

 Score =  481 bits (1238), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 278/347 (80%), Positives = 298/347 (85%), Gaps = 4/347 (1%)

Query: 1   VAVERTESRRLYENLLVRLARAEALLDGITVLADLQLTHYQPLRARLRSARVLGAIARQL 60
           VAVERTESRRLY+NLLVRLARA+ LLDG+T+L DLQLTHYQ  RAR R+ RVL  IARQL
Sbjct: 254 VAVERTESRRLYDNLLVRLARADDLLDGVTLLVDLQLTHYQEPRARQRTTRVLAGIARQL 313

Query: 61  QAMQREMQRGEAIAADEDARIMLRLRQLVARLPSGTGRLLQQLDTPLALGADDPARLKQA 120
           QAMQ  M +GEAIAADEDARIM RLRQLVARLPSGTGRLLQQ+ TPLA+G+DDPA LK  
Sbjct: 314 QAMQAAMSQGEAIAADEDARIMARLRQLVARLPSGTGRLLQQVHTPLAVGSDDPAGLKLM 373

Query: 121 ARAGHQARHGMSALLHRLRALGRKAALHVRAGSAEWHHAWRCAAAAGATYLIVHLLELPF 180
           AR+   A    + LLHR+RA  RKAA H   GSAEWHHAWRCAAAAGATYLIVHLLELPF
Sbjct: 374 ARSAAPAPALPAILLHRVRAWWRKAASHAATGSAEWHHAWRCAAAAGATYLIVHLLELPF 433

Query: 181 GYWATMATMLVMQPSIADSWSRSMERAVGSVVGGALAVAVCLVVHSPLGLALLVFPLTVL 240
           GYWATMATMLVMQPSIA+SWSRSMERAVGSVVGG LAV +CLVVHSPL LALLVFPLTVL
Sbjct: 434 GYWATMATMLVMQPSIAESWSRSMERAVGSVVGGVLAVVLCLVVHSPLALALLVFPLTVL 493

Query: 241 TMALRPVSYGLYATFLTPVFVLVADVGGDPAHELANAALRAGNNVIGALVAVLASYLFWP 300
           TMAL+PVSYGLYATFLTPVFVLVADVGGDPAHELANAALRAGNNVIGA+VAVLASYLFWP
Sbjct: 494 TMALKPVSYGLYATFLTPVFVLVADVGGDPAHELANAALRAGNNVIGAVVAVLASYLFWP 553

Query: 301 RRHEADPQGQLRTMAGLNLAYLTAALAVHDTAPDKARLSSLHAHRRA 347
           RRH  DPQ QL+ MA LNLAYL  ALA     P    +++LHAHRRA
Sbjct: 554 RRHPEDPQAQLQRMAQLNLAYLIEALATPAAPP----MATLHAHRRA 596


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,056,180
Number of extensions: 40260
Number of successful extensions: 201
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 317
Effective length of database: 1,207,925
Effective search space: 382912225
Effective search space used: 382912225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)