BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0403.p
         (375 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309388|ref|YP_003773480.1| periplasmic binding protein [He...   665   0.0  

>gi|300309388|ref|YP_003773480.1| periplasmic binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 374

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/373 (89%), Positives = 355/373 (95%)

Query: 1   MNLDLDFLYNMNEGPLRSGLIVLGVALVAVVVGIVLHRMGIALVRRLARGRPFTTTATTV 60
           M++DLDFLYNMNEGPLRSGLIVLGVALVAVVV + LHR+GIA+VRRLARGRPFTTTAT V
Sbjct: 1   MSIDLDFLYNMNEGPLRSGLIVLGVALVAVVVAVFLHRVGIAVVRRLARGRPFTTTATEV 60

Query: 61  TFNASRTCVILFMLRLVLAGAPDNTPGLTRISYLTSVAFILALTWFLMRCVKSVSTTVVN 120
           TF+ASRTCVILFMLRLVL GAPDNTPGLT ISYLTS+  ILALTWFL+RCVKSVS TV+N
Sbjct: 61  TFSASRTCVILFMLRLVLTGAPDNTPGLTSISYLTSIGLILALTWFLIRCVKSVSLTVIN 120

Query: 121 LNPYDVADNLKARRILTQTRVLSRSAYFIIALLGLAFVLLTLPGARQFGASLLASAGVAG 180
           LNPYDVADNLKARRILTQTRVLSRSAYFIIA+LGL+FVLLTLPGARQFGASLLASAGVAG
Sbjct: 121 LNPYDVADNLKARRILTQTRVLSRSAYFIIAMLGLSFVLLTLPGARQFGASLLASAGVAG 180

Query: 181 IVAGIAAKPVLGNFFAGLQIAFSQPIRIDDVLIVKGEWGRVEEITGTFVVVRIWDERRMI 240
           IVAGIAAKPVLGNFFAGLQIAFSQPIRIDDVLIVKGEWGRVEEITGTFVVVRIWDERRMI
Sbjct: 181 IVAGIAAKPVLGNFFAGLQIAFSQPIRIDDVLIVKGEWGRVEEITGTFVVVRIWDERRMI 240

Query: 241 VPLQWFIENPFENWTHTSSTILGTVFLWLDFAVPTNAIRAEFERVCQTLPLWDKRVCVMH 300
           VPLQWFIENPFENWTHTSSTILGTVFLWLDF+VPT AIR EFERVC++LPLWDKRVCVMH
Sbjct: 241 VPLQWFIENPFENWTHTSSTILGTVFLWLDFSVPTQAIRDEFERVCKSLPLWDKRVCVMH 300

Query: 301 VTDTSERNMQIRLLVSARDSGSAFDLRCQIREHMIGFIASNYPEALPRLRAEVSSRNRPE 360
           VTD SER MQ+RLLVSA+DSGSAFDLRCQIREHMIGFIA NYP ALPRLRAEV +RN PE
Sbjct: 301 VTDASERTMQVRLLVSAKDSGSAFDLRCQIREHMIGFIARNYPGALPRLRAEVEARNDPE 360

Query: 361 ALDTIIDGAPGEK 373
           A+D+IIDG P +K
Sbjct: 361 AIDSIIDGPPTQK 373


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 940,045
Number of extensions: 32580
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,207,925
Effective search space: 347882400
Effective search space used: 347882400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)