BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0399.p (504 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 178 1e-45 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 175 7e-45 gi|300311868|ref|YP_003775960.1| LysR family transcription regul... 161 1e-40 gi|300311929|ref|YP_003776021.1| LysR family transcription regul... 161 1e-40 gi|300311443|ref|YP_003775535.1| LysR family transcription regul... 154 1e-38 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 178 bits (451), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 158/292 (54%), Gaps = 7/292 (2%) Query: 1 MDSFSGISVFIQAVEAGSFIRAAERLHVTRSAVGKSIARLEERLGVRLFQRNTRSQSLTA 60 MD F + VF V+A SF RAA+ L++ R+ V + LE L VRL R TR SLT Sbjct: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTP 60 Query: 61 EGRAYYERCLRALEELESAQALVGDGQREPAGQVRISTPVLFGRLCVAPVLVELARRWPQ 120 +G AYYERC+R L +L+ + + R P G++RI P GRL + P L + R+P Sbjct: 61 DGAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPD 120 Query: 121 LDIVASFTDRRVDLIGEGVDLVLRSGPMPDTSDLVARRMGAQTMMLYASPDYLAQHGRPR 180 ++++ DR VDL+ E VD V+R G + D+S +VARR+G + A+P YL +HG P Sbjct: 121 IELMMGMGDRPVDLVQEAVDCVIRIGELQDSS-MVARRIGTFQTVTCAAPAYLERHGVPH 179 Query: 181 HFKDLARHHGILY-----GKTSGWPIRNE-TEKSPPPXSRLRFDDLEAIADATVAGAGLA 234 +DL +H + Y G+T W E + +L ++ +A + + G G+ Sbjct: 180 TIEDLQQHKAVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMV 239 Query: 235 HLPCWLIRDHLKAARLVKLMPEASFATIDMHLAWPPTRHLPLRVRTVIDALA 286 P +++ H+ RLV+++ + A + + + + RHL +VR +D +A Sbjct: 240 QAPLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVA 291 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 175 bits (444), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 159/293 (54%), Gaps = 5/293 (1%) Query: 1 MDSFSGISVFIQAVEAGSFIRAAERLHVTRSAVGKSIARLEERLGVRLFQRNTRSQSLTA 60 M+ I FI + GSF++AAE L ++++AV +++ LE RLG RL QR TR SLT Sbjct: 1 MNKLREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 Query: 61 EGRAYYERCLRALEELESAQALVGDGQREPAGQVRISTPVLFGRLCVAPVLVELARRWPQ 120 G Y ERC + + LE A L+ G +P G +RI+ P+ FG L +AP+ R P+ Sbjct: 61 AGALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPE 120 Query: 121 LDIVASFTDRRVDLIGEGVDLVLRSGPMPDTSDLVARRMGAQTMMLYASPDYLAQHGRPR 180 + + + +DR VD+I EG D+ +R + D S LV R++ + ++ + ASP YL HG P Sbjct: 121 ISLDITLSDRIVDIIDEGYDMAIRIARLSD-STLVHRKLTSTSLHVCASPAYLDAHGTPA 179 Query: 181 HFKDLARHHGILYGKTSG---WPIRN-ETEKSPPPXSRLRFDDLEAIADATVAGAGLAHL 236 H +LA+H I Y W E S SRL ++ ++ A + G G+ Sbjct: 180 HPHELAQHQTISYSYNQSKDEWQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQ 239 Query: 237 PCWLIRDHLKAARLVKLMPEASFATIDMHLAWPPTRHLPLRVRTVIDALAAAL 289 P ++I +L++ +LV ++ + + ++ +P HLP ++R ++D L A Sbjct: 240 PTFMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEAF 292 >gi|300311868|ref|YP_003775960.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 161/302 (53%), Gaps = 13/302 (4%) Query: 1 MDSFSGISVFIQAVEAGSFIRAAERLHVTRSAVGKSIARLEERLGVRLFQRNTRSQSLTA 60 M + +F + E SF AA +L + ++V +I +LE+ LG RL QR TR LTA Sbjct: 1 MHQLDTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTA 60 Query: 61 EGRAYYERCLRALEELESAQALVGDGQREPAGQVRISTPVLFGRLCVAPVLVELARRWPQ 120 +G A+Y R L+E ES + + DG + +G++R+ R V P L + PQ Sbjct: 61 DGEAFYRRSRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPSFLDKHPQ 120 Query: 121 LDIVASFTDRRVDLIGEGVDLVLRSGPMPDTSDLVARRMGAQTMMLYASPDYLAQHGRPR 180 L+I S +DRRVDL+ EG D VLR+G + D+S LVAR +G + ASP+YL ++G P+ Sbjct: 121 LEIELSASDRRVDLVAEGFDCVLRTGTLDDSS-LVARPIGHLVQINCASPEYLRRYGTPQ 179 Query: 181 HFKDLARHHGILY-----GKTSGWP-IRNETEKSPPPXSRLRFDDLEAIADATVAGAGLA 234 +DLA+H + Y G++ GW + +S P + + E A +AG GL Sbjct: 180 TLEDLAQHRLVHYRQVLGGRSPGWEWFDGQQTRSLPMAGSITVNSTETYYAACLAGLGLI 239 Query: 235 HLPCWLI----RDHLKAARLVKLMPEASFATIDMHLAWPPTRHLPLRVRTVIDALAAALP 290 LP L+ R L +V+++P+ A + + L + RH+P R+ +D L A + Sbjct: 240 QLP--LVGAQKRQMLDGGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMDWLHALIF 297 Query: 291 PL 292 PL Sbjct: 298 PL 299 >gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 161/292 (55%), Gaps = 9/292 (3%) Query: 6 GISVFIQAVEAGSFIRAAERLHVTRSAVGKSIARLEERLGVRLFQRNTRSQSLTAEGRAY 65 I +F +A E GSF AAE L +T ++V +SI+RLE RLGVRLF R TR LT EG Y Sbjct: 11 SIELFCKAAELGSFTAAAEALGLTPASVSRSISRLESRLGVRLFARTTRQIRLTREGELY 70 Query: 66 YERCLRALEELESAQALVGDGQREPAGQVRISTPVLFGRLCVAPVLVELARRWPQLDIVA 125 ++C +ALE++ A+ ++ Q+ P+G +RIS + + P+L + +PQ+++ Sbjct: 71 RDQCQQALEQIADAERILTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQQAYPQIEVEL 130 Query: 126 SFTDRRVDLIGEGVDLVLRSGPMPDTSDLVARRMGAQTMMLYASPDYLAQHGRPRHFKDL 185 S +R VD + EG DL +R G PD S L+A + T+ L+A+P YLA+ G+PR +L Sbjct: 131 SIANRVVDFVEEGYDLAIRLGVPPD-SRLIAHTLEEATLGLFAAPAYLARRGQPRSIAEL 189 Query: 186 ARHHGILY-----GKTSGWPIRNETEKSPP--PXSRLRF-DDLEAIADATVAGAGLAHLP 237 +H I + G+ W ++ + SR R DD+ + +AG GL + Sbjct: 190 EQHDCIQFILPSSGRAMPWIFKDAQGRDMDFHFKSRQRIHDDVLGCVNWAIAGGGLFQIY 249 Query: 238 CWLIRDHLKAARLVKLMPEASFATIDMHLAWPPTRHLPLRVRTVIDALAAAL 289 ++ ++ LV+++ +A + T + +P RHL RVR ++ L A+ Sbjct: 250 HFIADAAVRRGELVEVLQQAGYRTRRFSILYPHNRHLSARVRAFVEFLRQAV 301 >gi|300311443|ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 154 bits (390), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 151/296 (51%), Gaps = 11/296 (3%) Query: 1 MDSFSGISVFIQAVEAGSFIRAAERLHVTRSAVGKSIARLEERLGVRLFQRNTRSQSLTA 60 M + I +F+ V AGSF A RL + + + + + LE +GVRL QR+TR ++TA Sbjct: 1 MLDLNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTA 60 Query: 61 EGRAYYERCLRALEELESAQALVGDGQREPAGQVRISTPVLFGRLCVAPVLVELARRWPQ 120 GR ++ERC LE++E A A + + Q EPAG +R++ PV F + E +P+ Sbjct: 61 AGREFFERCAPGLEDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMHLYPK 120 Query: 121 LDIVASFTDRRVDLIGEGVDLVLRSGPMPDTSDLVARRMGAQTMMLYASPDYLAQHGRPR 180 + + D R DLI EG+DL R G +PD+S LVAR++ + L ASP YL + G P+ Sbjct: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSS-LVARKLVQSHLALIASPRYLERQGTPQ 179 Query: 181 HFKDLARHHGILYGKT---SGWPIRN----ETEKSPPPXSRLRFDDLEAIADATVAGAGL 233 DL H + + + W + E+ K P RL + + A AG G+ Sbjct: 180 SLTDLTAHACLATSQAPQHTVWKLEGPHGPESVKVTP---RLCVNTAQGQLRAARAGLGI 236 Query: 234 AHLPCWLIRDHLKAARLVKLMPEASFATIDMHLAWPPTRHLPLRVRTVIDALAAAL 289 A LP L + L+ LV ++P+ T+ + + R LP V +I+ A L Sbjct: 237 ALLPTMLASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKL 292 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,507,616 Number of extensions: 62927 Number of successful extensions: 424 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 368 Number of HSP's successfully gapped: 57 Length of query: 504 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 415 Effective length of database: 1,198,455 Effective search space: 497358825 Effective search space used: 497358825 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)