BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0398.p (339 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310297|ref|YP_003774389.1| alcohol dehydrogenase [Herbaspi... 89 5e-19 gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase [H... 89 6e-19 gi|300312794|ref|YP_003776886.1| NADPH:quinone oxidoreductase [H... 72 8e-14 gi|300310813|ref|YP_003774905.1| NADPH:quinone oxidoreductase [H... 61 1e-10 >gi|300310297|ref|YP_003774389.1| alcohol dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 341 Score = 89.0 bits (219), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 89/296 (30%), Positives = 133/296 (44%), Gaps = 21/296 (7%) Query: 12 QFGKQHLQLQTVAIPRPGPGQILVRVAAVALNYRDKMNIDNGTGGAQVLPPFTPASDMAG 71 +FGK L ++ V +P P PGQILV+ A + + D ++ +G + PPF P + G Sbjct: 12 EFGKP-LSIEQVPVPTPAPGQILVKFEASGVCHTD-LHAAHGDWPVKPTPPFIPGHEGTG 69 Query: 72 EVVAVGEGVQRLVPGQRV-----------ISTFWGGWLDGPWPQGTLALGAPGPGMLAEY 120 V AVG GV+ + G RV S GW Q G G AEY Sbjct: 70 YVAAVGAGVKHVKEGDRVGVPWLHTACGCCSPCRTGWETLCAEQQN--TGYSVNGSFAEY 127 Query: 121 VLLQEDWAVAAPLHLTDAQASTLPCAGLTAWMALVEHGHLHAGQTVVLQGTGGVALFGVQ 180 L + P +L A+ + CAG+T + L E + G+ VV+ G GG+ VQ Sbjct: 128 GLADPKFVGHLPDNLDFGPAAPVLCAGVTVYKGLKET-EVRPGEWVVISGIGGLGHMAVQ 186 Query: 181 LAAAHGARTIIFSGDASKLERARALGATHGLLRSQHPEWQHEVRALTEGRGADHVLELVG 240 A A G + KL A+ LGA + H R + GA ++ V Sbjct: 187 YAKAMGMHVVAADIHEDKLALAKKLGADLTVDGRNHNAVAEVQRIIGGAHGA--LVTAVS 244 Query: 241 GENIGRSLQALRQGGRLSVIGL-LGDAQLQTSIFPLLLGRHTIQGIGVGHRRALED 295 + + ++ LR G ++++GL GD L +F +L R T++G VG R+ LE+ Sbjct: 245 PKAMEQAFGFLRARGTMALVGLPPGDISL--PVFNTVLKRITVRGSIVGTRQDLEE 298 >gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 325 Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 86/326 (26%), Positives = 144/326 (44%), Gaps = 36/326 (11%) Query: 14 GKQHLQLQTVAIPRPGPGQILVRVAAVALNYRDKMNIDNGTGGAQVLPPFT--PASDMAG 71 G + LQ +P G++L++V A +N D + TG V P + P ++AG Sbjct: 11 GPEVLQACERPVPELKAGEVLIKVHAAGVNRPD---VFQRTGNYPVPPGASDLPGLEVAG 67 Query: 72 EVVAVGEGVQRLVPGQRVISTFWGGWLDGPWPQGTLALGAPGPGMLAEYVLLQEDWAVAA 131 E+VA G D + G L G AE+ + Sbjct: 68 EIVA-------------------GDLGDSGFKLGDLVCALVQGGGYAEFCAAPLAQCLPV 108 Query: 132 PLHLTDAQASTLPCAGLTAWMALVEHGHLHAGQTVVLQG-TGGVALFGVQLAAAHGARTI 190 P L+ +A+ LP T W + + G L +T+++QG + G+ + +Q+A A G R Sbjct: 109 PKGLSALEAAALPENYFTVWSNVFDRGQLSGEETLLVQGGSSGIGVTAIQIARALGHRVF 168 Query: 191 IFSGDASKLERARALGATHGLLRSQHPEWQHEVRALTEGRGADHVLELVGGENIGRSLQA 250 +G A K LGA + + +++ V+ LT GRG D +L++VGG+ + R ++A Sbjct: 169 ATAGSAEKCRACEELGAERAI-NYKTEDFEAVVKELTGGRGVDVILDMVGGDYLPREIKA 227 Query: 251 LRQGGRLSVIGLLGDAQLQTSIFPLLLGRHTIQGIG-----VGHRRALEDLVRA-----V 300 L GRL I LG A+ Q + ++ R TI G V + A+ +R + Sbjct: 228 LADDGRLVFIAQLGGAKGQLDMGQVMRRRLTITGSTLRPRPVAFKAAIAAKLREHVWPLI 287 Query: 301 DHLRLVPVVEREYGFAQLPEALAHLE 326 + ++ PV+ + Q +A A +E Sbjct: 288 EAGKIRPVIHHRFPLEQAAQAHAMME 313 >gi|300312794|ref|YP_003776886.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 342 Score = 71.6 bits (174), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 117/277 (42%), Gaps = 51/277 (18%) Query: 14 GKQHLQLQTVAIPRPGPGQILVRVAAVALNYRDKMNIDNGTGGAQVLPP---------FT 64 G + L+ + +P PG++LVRV AV LN D + G ++LPP Sbjct: 16 GPEVLRYEDAPVPELQPGEVLVRVHAVGLNPPDWYLRE----GYKMLPPEWQPTVAFPLI 71 Query: 65 PASDMAGEVVAVGEGVQRLVPGQRVISTFWGGWLDGPWPQGTLALGAPGPGMLAEYVLLQ 124 +D++G V AV + V+ G V S +P G A G A+YV + Sbjct: 72 LGTDISGVVEAVADDVKDFAVGDEVYSMVR-------FPSGL----AGGSRAYAQYVSVA 120 Query: 125 EDWAVAAPLHLTDAQASTLPCAGLTAWMALVEHGH--------------LHAGQTVVLQG 170 P ++ AQA+ P + LTAW ++E GH +TVV+ G Sbjct: 121 ASEIALKPQRISHAQAAAAPMSLLTAWQFMIELGHDIQNPLQPHRHEPVPLKDKTVVVNG 180 Query: 171 T-GGVALFGVQLAAAHGARTIIFSGDASKLERARALGATHGLLRSQHPEWQHEVRALTEG 229 GGV F +QLA GAR I G R LGA E+ R+ E Sbjct: 181 AAGGVGHFALQLAKWKGARVIAI-GSGGHEAFLRDLGAD---------EFIDYTRSAAED 230 Query: 230 --RGADHVLELVGGENIGRSLQALRQGGRLSVIGLLG 264 D V++ VGG GR L+ L++GG L I LG Sbjct: 231 VLSDVDLVIDAVGGPASGRFLRTLKRGGALFPIFPLG 267 >gi|300310813|ref|YP_003774905.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 309 Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/199 (34%), Positives = 95/199 (47%), Gaps = 30/199 (15%) Query: 62 PFTPASDMAGEVVAVGEGVQRLVPGQRV--ISTFWGGWLDGPWPQGTLALGAPGPGMLAE 119 P P D AG + A+GEGV L G+ V + + G +GT LAE Sbjct: 60 PKVPGRDGAGVITALGEGVHTLQVGEAVCVMPSMAG--------RGT---------TLAE 102 Query: 120 YVLLQEDWAVAAPLHLTDAQASTLPCAGLTAWMALVEHGHLHAGQTVVLQ-GTGGVALFG 178 VL QE V P L+ QA+ L +AW+AL++ + AG V + G+G V Sbjct: 103 LVLPQEQ-VVRKPDVLSMQQAAALLQPACSAWIALMQTAPIAAGMKVFIHAGSGAVGSLM 161 Query: 179 VQLAAAHGARTIIFSGDASKLERARALGATHGLLRSQHPEWQHEVRALTEGRGADHVLEL 238 VQLAA GA + S +S +E ALGA+ L ++ L R D V++L Sbjct: 162 VQLAAHLGAE-VTASCRSSNVEYVAALGASRVL--------AYDRDELGRVRDQDVVIDL 212 Query: 239 VGGENIGRSLQALRQGGRL 257 VGG +S + LR+GG+L Sbjct: 213 VGGAAHDQSYRMLRRGGQL 231 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,177,782 Number of extensions: 51574 Number of successful extensions: 199 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 4 Length of query: 339 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 253 Effective length of database: 1,212,660 Effective search space: 306802980 Effective search space used: 306802980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)