BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0396.p
         (433 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309392|ref|YP_003773484.1| major facilitator superfamily (...   645   0.0  

>gi|300309392|ref|YP_003773484.1| major facilitator superfamily
           (MFS) transporter transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 423

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/405 (82%), Positives = 363/405 (89%)

Query: 29  KPVKQPGTVLPRGAVRGSAAYRNIVLALFCSGFATFSLLYCVQPLLPAFAQEFGIGAASA 88
            P +      PRGA RGSAAY  IVLALF SGFATFSLLYCVQPLLP FAQEFGIGAASA
Sbjct: 19  TPAQTAPEAAPRGATRGSAAYARIVLALFFSGFATFSLLYCVQPLLPIFAQEFGIGAASA 78

Query: 89  SLALSLSTGFLAVSILLAGMVSERYGRKELMFASLATAACCNLLAGVAPNWELILVVRAV 148
           SLALSLSTG LAVSI+LAGM+SERYGR+ELMFASLATAACCNL AGVAP+W L+L+ R +
Sbjct: 79  SLALSLSTGLLAVSIVLAGMLSERYGRRELMFASLATAACCNLAAGVAPDWHLLLLARTL 138

Query: 149 EGIALGGVPAVAMAYLAEEIDASGLGYAMGLYVGGNAFGGMVGRVAMSTMSEHIGWRHAM 208
           EGIALGGVPAVAMAYLAEEIDA+GLG+AMGLYVGGNAFGGM GRVAMS ++EH+GWR  M
Sbjct: 139 EGIALGGVPAVAMAYLAEEIDAAGLGFAMGLYVGGNAFGGMAGRVAMSVLAEHLGWRAGM 198

Query: 209 LVIGALDLALAVAFVLMLPASRNFVRNGTMQLRDHVALWKRHLGHARLPLTFGIAALNMG 268
           L+IGALDLALAVAFV+MLPASR+FVRN +M+L DH ALW+ HL HARLPL F IAALNMG
Sbjct: 199 LIIGALDLALAVAFVMMLPASRHFVRNSSMRLADHFALWRGHLRHARLPLCFAIAALNMG 258

Query: 269 IFATSYNYAGFRLMSPPFSLSATLTGLIFSAYIFGIVSSSWAGSLADRYGRAPLVAAGIA 328
           +F TSYNYAGFRLMSPPFSLSAT+TGLIFSAY+FG++SSSWAG+LADRYGRAPLVAAGI 
Sbjct: 259 VFVTSYNYAGFRLMSPPFSLSATVTGLIFSAYLFGMLSSSWAGALADRYGRAPLVAAGIG 318

Query: 329 TSCAGLFLTCTSSLALVITGIVLLTIGFFTTHSAASSWVGRMASSGRGHAASLYLLSYYL 388
            SC GL LTCTSSL LVI GIVLLTIGFFTTHSAASSWVGRMA  G+GHAASLYLL+YYL
Sbjct: 319 VSCLGLLLTCTSSLVLVIGGIVLLTIGFFTTHSAASSWVGRMAREGKGHAASLYLLAYYL 378

Query: 389 GGSVLGSAGGWFWEHSGWNAVAAFMLLQVLTAAWLARRLWRQGRN 433
           GGS+LGS GGWFWEH+GWNAVA FMLLQV+ AAW ARRLWRQGRN
Sbjct: 379 GGSILGSVGGWFWEHAGWNAVAGFMLLQVMGAAWAARRLWRQGRN 423


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,271,363
Number of extensions: 48935
Number of successful extensions: 406
Number of sequences better than 1.0e-08: 15
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 15
Length of query: 433
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 345
Effective length of database: 1,203,190
Effective search space: 415100550
Effective search space used: 415100550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)