BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0395.p (299 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309393|ref|YP_003773485.1| LysR family transcription regul... 526 e-151 gi|300312750|ref|YP_003776842.1| LysR family transcription regul... 199 3e-52 gi|300310436|ref|YP_003774528.1| LysR family transcription regul... 144 1e-35 gi|300313102|ref|YP_003777194.1| LysR family transcription regul... 140 9e-35 gi|300310159|ref|YP_003774251.1| LysR family transcription regul... 140 1e-34 >gi|300309393|ref|YP_003773485.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 526 bits (1355), Expect = e-151, Method: Compositional matrix adjust. Identities = 275/295 (93%), Positives = 285/295 (96%) Query: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKDLEAEIGGALFLRTSHGVELSEV 60 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIK LE E+GGALFLR+S GVELSEV Sbjct: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKALEEEVGGALFLRSSQGVELSEV 60 Query: 61 GRVFLPHAQKAVDGAEQALRAAQQAASGEVGLLRMGFTSSAVFHPLVSHALQQFRERHRK 120 GRV LPHAQ+AVD AEQALRAA+QAASGE GLLRMGFTSSAVFHPLVSHALQQFRERHRK Sbjct: 61 GRVLLPHAQRAVDQAEQALRAARQAASGETGLLRMGFTSSAVFHPLVSHALQQFRERHRK 120 Query: 121 LEISLSEGITEQLLADIAASQLDAAFVRIVTTPSAELGVVELPAEKLKVALPRSHPLARR 180 LEISLSEGITEQLLADIAASQLDAAFVRIVTTPSA LGVVELPAEKLKVALPRSHPLARR Sbjct: 121 LEISLSEGITEQLLADIAASQLDAAFVRIVTTPSAALGVVELPAEKLKVALPRSHPLARR 180 Query: 181 KSLHLQDLAGENFIMVPRGKGSALYDNIFSACQAAGFDPQVIQLAPQLTSAINLVAAGLG 240 KSL LQDLA ENFIMVPRGKGSALYD+IFSACQAAGFDPQVIQLAPQLTSAINLVA+GLG Sbjct: 181 KSLRLQDLASENFIMVPRGKGSALYDSIFSACQAAGFDPQVIQLAPQLTSAINLVASGLG 240 Query: 241 ISIVPEAIEQVQLAQVRYIDIREPAPRAQLSLAYHRQSIAASRFAAHLQRSLKRS 295 ISIVPEAIEQVQLAQVRY++I EPAPRAQLSLAYHRQSIAASRFAAHLQRSL+R+ Sbjct: 241 ISIVPEAIEQVQLAQVRYVEIVEPAPRAQLSLAYHRQSIAASRFAAHLQRSLRRA 295 >gi|300312750|ref|YP_003776842.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 199 bits (506), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 123/305 (40%), Positives = 179/305 (58%), Gaps = 9/305 (2%) Query: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKDLEAEIGGALFLRTSHGVELSEV 60 ++LR LRYF+AVAE+ T+AAE++GI QPPLS QI+ LE E+G LF R G+EL++ Sbjct: 19 IDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRVLERELGVTLFNRLPRGMELTDS 78 Query: 61 GRVFLPHAQKAVDGAEQALRAAQQAASGEVGLLRMGFTSSAVFHPLVSHALQQFRERHRK 120 G L A+ + + + + ++ A G++G + +GFT SA HP V ++ FR Sbjct: 79 GAALLIDARALLAQLDTTVASVRRIAQGKMGRIAVGFTESASLHPFVHSVIRAFRADAPD 138 Query: 121 LEISLSEGITEQLLADIAASQLDAAFVRIVTTPSAELGVVELPAEKLKVALPRSHPL--- 177 + +++ E T +L+ + +LD AFVR S L + + E + ALP HPL Sbjct: 139 VAMTVEESNTNELIEALRGKRLDLAFVRSPVGDSGGLTIETMLEEDMVAALPIDHPLVDG 198 Query: 178 ARRKSLHLQDLAGENFIMVPRGKGSALYDNIFSACQAAGFDPQVIQLAPQLTSAINLVAA 237 +RKS+ L LA E+FIM R G LYD I +AC AAGF PQVIQ A + S ++LVAA Sbjct: 199 GKRKSIALHALAEESFIMTRRPNGPGLYDTIIAACHAAGFSPQVIQEARKNLSTLSLVAA 258 Query: 238 GLGISIVPEAIEQVQLAQVRYIDIR-EPAPRAQLSLAYHRQSIAASRFAAHLQR--SLKR 294 G+G++++P ++ +V V Y+ + P +A L LAY SI+ AA L R +LK Sbjct: 259 GVGVTVIPASMTRVNAEGVVYLKLTGAPDLKAPLHLAYRTGSISG---AARLMREEALKL 315 Query: 295 SAPDK 299 SA K Sbjct: 316 SAGRK 320 >gi|300310436|ref|YP_003774528.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 300 Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 101/280 (36%), Positives = 154/280 (55%), Gaps = 4/280 (1%) Query: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKDLEAEIGGALFLRTSHGVELSEV 60 +ELR LRYF AVAE+ F RAA ++ + QPPLS I LE +G LF RT V L+ Sbjct: 7 LELRQLRYFAAVAEEMHFGRAAARLHMTQPPLSQTIAALEELLGTPLFQRTKRSVALTAA 66 Query: 61 GRVFLPHAQKAVDGAEQALRAAQQAASGEVGLLRMGFTSSAVFHPLVSHALQQFRERHRK 120 G LP AQ+ + A ++AASG GLL + F SSA + ++ LQ+FR + + Sbjct: 67 GAALLPEAQRLLQQAAALPDLVRRAASGASGLLSLSFISSADYS-ILPPLLQRFRAHYPQ 125 Query: 121 LEISLSEGITEQLLADIAASQLDAAFV--RIVTTPSAELGVVELPAEKLKVALPRSHPLA 178 ++I L E T+ L D+ ++DA + + +A L V + +E L ALP + Sbjct: 126 VQIELREATTDVQLEDLLQGKIDAGLLLPPLPEKAAALLEVRPVLSEPLIAALPEGA-VR 184 Query: 179 RRKSLHLQDLAGENFIMVPRGKGSALYDNIFSACQAAGFDPQVIQLAPQLTSAINLVAAG 238 +R + L+ L I+ PR A +D I S + AG P + Q A Q+ + + LV+AG Sbjct: 185 KRGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVSAG 244 Query: 239 LGISIVPEAIEQVQLAQVRYIDIREPAPRAQLSLAYHRQS 278 +G+++VP+++ ++ V Y + +PAP Q SLA+ R S Sbjct: 245 MGMALVPQSVSNLKRPGVDYRRLSDPAPAIQTSLAWRRDS 284 >gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 140 bits (354), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 6/255 (2%) Query: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKDLEAEIGGALFLRTSHGVELSEV 60 +ELRHL YF VAE F RAAE + I QPPL+ QI LE E+G LF R+ ++L+ Sbjct: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTAA 61 Query: 61 GRVFLPHAQKAVDGAEQALRAAQQAASGEVGLLRMGFTSSAVFHPLVSHALQQFRERHRK 120 G+ F + E+A R +++G+ G L++GF S ++ L S + + + + Sbjct: 62 GKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPS-VTRHYSAAYPE 120 Query: 121 LEISLSEGITEQLLADIAASQLDAAFVRIVTTP--SAELGVVELPAEKLKVALPRSHPLA 178 +++ L+E + L DI ++D V I+ P L + AE L LPR H LA Sbjct: 121 VDMRLTEYVPNLLATDIEDEKID---VGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLA 177 Query: 179 RRKSLHLQDLAGENFIMVPRGKGSALYDNIFSACQAAGFDPQVIQLAPQLTSAINLVAAG 238 R+S+ +LA + FI +PR +YD I CQ GF P+++ + +NLV G Sbjct: 178 GRQSISAAELAEDAFISIPRMIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEG 237 Query: 239 LGISIVPEAIEQVQL 253 LG+++VP +++ + L Sbjct: 238 LGVALVPTSMQAMHL 252 >gi|300310159|ref|YP_003774251.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 102/307 (33%), Positives = 153/307 (49%), Gaps = 9/307 (2%) Query: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKDLEAEIGGALFLRTSHGVELSEV 60 ME RHLRYFL V E S AA ++ I QP LS QIK LE E+G ALF R+ G L+ Sbjct: 1 MEFRHLRYFLGVVEHGSVAEAARRLHIAQPALSRQIKYLEEELGAALFDRSVRGATLTAA 60 Query: 61 GRVFLPHAQKAVDGAEQALRAAQQAASGEVGLLRMGFTSSAVFHPLVSHALQQFRERHRK 120 G+ + A++ + ++ + + A G G LRMG T + +HP + +L+ F + + Sbjct: 61 GQQLVIDARRMLADLQETRQRVARVAEGLEGNLRMGITPNFGWHPRILGSLRHFHQAEPQ 120 Query: 121 LEISLSEGITEQLLADIAASQLDAAFVRIVTTPSA-----ELGVVELPAEKLKVALPRSH 175 + +SL G++ + L I + LDA F+ P+ E G +++ +LK+ALPR Sbjct: 121 IAVSLEPGLSARQLERIRSGDLDAGFLAWRYPPNDQFLAHEFGEIQVFECRLKLALPRDS 180 Query: 176 PLARRKSLHLQDLAGENFIMVPRGKGSALYDNIFSA-CQAAGFDPQVIQLAPQLTSAINL 234 LAR+ HL L E I P + + YD + CQ P+ QLA + S + L Sbjct: 181 QLARQVPRHLAALHDEPAIWFP-AEVAPGYDQFLNYQCQMVNLVPRKAQLASDVLSILGL 239 Query: 235 VAAGLGISIVPEAIEQVQLAQVRYIDIREPAPRAQLSLAYH--RQSIAASRFAAHLQRSL 292 VAAG+G +IV + V +D E R +S Y + +R+ AHL+R Sbjct: 240 VAAGVGYAIVSDVSAYTCPEGVVLVDHPELTLRHPVSFVYRADNGNPTLARYMAHLERMR 299 Query: 293 KRSAPDK 299 D+ Sbjct: 300 SSDETDQ 306 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 865,641 Number of extensions: 33750 Number of successful extensions: 281 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 239 Number of HSP's successfully gapped: 58 Length of query: 299 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 214 Effective length of database: 1,217,395 Effective search space: 260522530 Effective search space used: 260522530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)