BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0394.p
         (235 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311373|ref|YP_003775465.1| flagellar assembly protein FliH...   370   e-104

>gi|300311373|ref|YP_003775465.1| flagellar assembly protein FliH
           [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  370 bits (950), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/235 (89%), Positives = 220/235 (93%), Gaps = 2/235 (0%)

Query: 1   MRAKIIPKEEMTPYQRWELASFNEEPEPEPQPEMLPEEEEFLEEPPPVPQLTAEQLDAIR 60
           MRAKIIPKEEMTPYQRWELASF++EPEPEP+P    EE    EEPPPVPQLTAEQLDAIR
Sbjct: 1   MRAKIIPKEEMTPYQRWELASFHDEPEPEPEPLPEEEEFL--EEPPPVPQLTAEQLDAIR 58

Query: 61  EAARQEGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQCSEKM 120
           EAARQEGFAEGREHGLQAGRSEGY+AGLQQGQQE+NE+IQHFRQIAVNFSTEVSQCSEKM
Sbjct: 59  EAARQEGFAEGREHGLQAGRSEGYMAGLQQGQQEINEVIQHFRQIAVNFSTEVSQCSEKM 118

Query: 121 APELLDLALDLAKSMLKTALNVRPELILPTVSAAIHALPVLQLPASLTLHPEDAALVRKH 180
           APELLDLALDLAKSMLKTAL  RPEL+LPTVSAAI ALPVLQLPASL LHPEDAALVRKH
Sbjct: 119 APELLDLALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAALVRKH 178

Query: 181 LGEELAQQGWKIEEDAHLDRGGCRVETRTNQIDATTPTRWQRLGESLSKQLDWLE 235
           LGEEL QQGWKIEEDA LDRGGC+VETRTNQIDATT TRW+RLGESLSKQLDWLE
Sbjct: 179 LGEELTQQGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWLE 233


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 625,196
Number of extensions: 21805
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 153
Effective length of database: 1,231,600
Effective search space: 188434800
Effective search space used: 188434800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)