BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0392.p
         (593 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059...  1028   0.0  

>gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059
           [Herbaspirillum seropedicae SmR1]
          Length = 569

 Score = 1028 bits (2658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/570 (94%), Positives = 555/570 (97%), Gaps = 2/570 (0%)

Query: 25  MPQGQAAQGGVMGYARSPQGKRILLIIAAAATLALMAGIWLWSQKVEYRVLFANFNDRDG 84
           MP  Q AQ G+MGYARSPQGKRILLIIAAAATLA+MAGIWLWSQKVEYRVLF+NFNDRDG
Sbjct: 1   MPGSQPAQNGMMGYARSPQGKRILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDG 60

Query: 85  GAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLASQGLPKGGNVGFELMENQKLGI 144
           GAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLA+QGLPKGGNVGFELMENQKLGI
Sbjct: 61  GAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGI 120

Query: 145 SQFLEQVX-QRALEGELARSVQSLASVQTARVHLALPKASVFVRDQQKPTASVILSLYPG 203
           SQFLEQV  QRALEGELARSV SLASVQTARVHLALPKASVFVRDQQKPTASV+LSLYPG
Sbjct: 121 SQFLEQVNFQRALEGELARSVGSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPG 180

Query: 204 RFLDQQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQTNTLDPTQLKYVQDM 263
           R+LD QQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQ NTLDPTQLKYVQDM
Sbjct: 181 RYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDM 240

Query: 264 QQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTRDTAAVRSKQSSEA 323
           QQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQT+D+AAVRSKQSSEA
Sbjct: 241 QQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEA 300

Query: 324 NSATSGTSGIPGALTNQPPAPATAPIVNPAVANGAANQNGTAATPNGAAPTPAASGNSRK 383
           NSA++GTSG+PGAL+NQPPAPATAPIVNPAVANGAANQ G AATPNGA PTP A+GNSRK
Sbjct: 301 NSASNGTSGVPGALSNQPPAPATAPIVNPAVANGAANQTG-AATPNGALPTPTATGNSRK 359

Query: 384 DETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTLDNTGKIVMRPLTEAERNQITDLV 443
           DETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRT+DNTGKIVMRPLTEAERNQITDLV
Sbjct: 360 DETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLV 419

Query: 444 KEAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMIELAKEIGKYVLVAAVLLFLYFR 503
           KEAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMI+LAKEIGKYVLVAAVLLFLYFR
Sbjct: 420 KEAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFR 479

Query: 504 VLRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGEPAVDERAQ 563
           VLRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGE  VDERAQ
Sbjct: 480 VLRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGESEVDERAQ 539

Query: 564 YKANLETAKQWAKNDPKLVASIIKSWVNNE 593
           YKANLETAKQWAKNDPKLVASIIKSWVNNE
Sbjct: 540 YKANLETAKQWAKNDPKLVASIIKSWVNNE 569


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,507,030
Number of extensions: 52241
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 502
Effective length of database: 1,188,985
Effective search space: 596870470
Effective search space used: 596870470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 133 (55.8 bits)