BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0386.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311382|ref|YP_003775474.1| flagellin-specific chaperone Fl...   261   3e-71

>gi|300311382|ref|YP_003775474.1| flagellin-specific chaperone FliS
           [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score =  261 bits (666), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 134/156 (85%), Positives = 139/156 (89%), Gaps = 5/156 (3%)

Query: 1   MFGSMKRGANAYANIGVETGVIAASPHKLITMLFDGALVAIALGKKSMGEGNIKDKGESI 60
           MFG+MKRGANAYANIGVETGV+AASPHKLITMLFDGALVAIALGKK M EGNIKDKGESI
Sbjct: 1   MFGTMKRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESI 60

Query: 61  TKAILIIDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEIHGLLDDI 120
           TKAILI+DNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDE+H LL+DI
Sbjct: 61  TKAILIVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDI 120

Query: 121 RSAWEQIGPN---AVQSAAPPMAMTQDVSLSSFAKA 153
           RSAWEQIGPN   A   AAP  A T   S  SFAKA
Sbjct: 121 RSAWEQIGPNGQPASMQAAP--APTAAFSQPSFAKA 154


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 454,327
Number of extensions: 17251
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)