BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0385.p (689 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 pro... 1154 0.0 gi|300310454|ref|YP_003774546.1| flagellar hook-associated prote... 943 0.0 gi|300312832|ref|YP_003776924.1| flagellar capping protein [Herb... 713 0.0 >gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 protein [Herbaspirillum seropedicae SmR1] Length = 690 Score = 1154 bits (2986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/689 (85%), Positives = 650/689 (94%) Query: 1 VATSTGTISTSAGPLDVSTLVSQLISAESQTQLTPLTTQASSYNTLISAYGSLKSALSSY 60 +ATSTGTISTSAGPLDV+TLVSQLISAESQ+QLTPLTTQASSYNTLISAYGSLKSA+S+Y Sbjct: 1 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY 60 Query: 61 QSAIKSLTSASFSSQKSSVSNAGTGTTLTTDPFTADVNSDDSTKILAQKLQSAGVSSGTT 120 QSAIK++TSASFS+QKSSVSNAGTG+ LTTDPF+AD+N DDSTKILAQK+QSAG+SSGTT Sbjct: 61 QSAIKAMTSASFSAQKSSVSNAGTGSNLTTDPFSADINGDDSTKILAQKIQSAGISSGTT 120 Query: 121 YNAGDSIAIKIGTNSPTFITLQANSTLAGVRDAINASKAGVTASITTDASGDHLVLESAT 180 +NAGDSIAIKIGTNSP F+TLQANSTLAGVRDAINA K G TASI TD +GDHLVLES T Sbjct: 121 FNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLESNT 180 Query: 181 GGTANTIKVTANNSLSAFAYDPSSSTPSTMTQIQAPRDATKAASGTYSVAVSQLAQTAKL 240 GGTANTIKVTANNSLS F YDPSSSTPSTMTQ QAPRDATKAASG Y+VAVSQLAQ KL Sbjct: 181 GGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAEKL 240 Query: 241 SSASITPGTTFDNGILAIKTGTGSTAIIQPATNTLAGVRDAINSSDAGVNATIVSDGTND 300 SSASI PG+TFDNG+LAIKTG+GST II+P TNTLAGVRDAINSSDAGVNATIVSDGTND Sbjct: 241 SSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGTND 300 Query: 301 HLVITAKDSGAANTIKITGTGNYSVFSADPSGTVISPNVSTSQTYSSGTLSLKVGDTTVA 360 HLV+TAK+SG+ NTIKITGT N++VF++DPSGTV SPNV++ QTYS+G L+LKVGD++ Sbjct: 301 HLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKVGDSSFN 360 Query: 361 INPTANGSGNIDLNQVMSAINSASAGVTASISNDGTNNHLVLTPTGSSATAAVSLTGSGD 420 I P ANGSGNIDL QV AIN+A+AGVTASI+NDG+N+HLVLTPTGSSATAAVSLTG+ D Sbjct: 361 IAPVANGSGNIDLTQVKLAINNANAGVTASITNDGSNDHLVLTPTGSSATAAVSLTGTSD 420 Query: 421 YSGLTMSGMGQLLKAQDAKLSIDGVAVTSTSNKVENAISGVTLNLAKVTTSSDNFTLNIS 480 Y+GL+MSGMGQLLKAQDAKLSIDGV VTS +NKVEN ISGVTLNL+KVTTS+DNFTLNIS Sbjct: 421 YAGLSMSGMGQLLKAQDAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSADNFTLNIS 480 Query: 481 NDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANNSAPLASESSVQTIMNQLRN 540 NDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQAN SAPLASESSVQTIM+QLRN Sbjct: 481 NDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQLRN 540 Query: 541 TLFATVDGGNGISSLSDIGISFQKDGTLALDSTKLATAATNNFAGIANLFTGTDPDTTNT 600 TLF+TVDGGNGI++LSDIGISFQKDGTLALDSTKL+TAATNNFAGIANLF GTDPD TNT Sbjct: 541 TLFSTVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLFAGTDPDPTNT 600 Query: 601 TSSKNGIVTKLQTLMTSLLSDSGIIASKTNGLQASLKINQDRQTTVQTRLSNLKDDYTNQ 660 TSSKNGIVTKLQTLMTSLLSD+GIIA+KT+GLQASLKINQDRQT VQ+RLSNLKD YTNQ Sbjct: 601 TSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNLKDAYTNQ 660 Query: 661 FNRLNVTLASMQSTQSYLTQQLASLAKSS 689 FN+LN+TL+SMQSTQSYLTQQLA+LAKSS Sbjct: 661 FNQLNLTLSSMQSTQSYLTQQLANLAKSS 689 >gi|300310454|ref|YP_003774546.1| flagellar hook-associated protein 2 [Herbaspirillum seropedicae SmR1] Length = 676 Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/690 (70%), Positives = 587/690 (85%), Gaps = 15/690 (2%) Query: 1 VATSTGTISTSAGPLDVSTLVSQLISAESQTQLTPLTTQASSYNTLISAYGSLKSALSSY 60 +ATSTGTISTSAGPLDV+TLV+QLIS ES+++LTPL + SS+NTLISAYGSLK+A +SY Sbjct: 1 MATSTGTISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSY 60 Query: 61 QSAIKSLTSASFSSQKSSVSNAGTGTTLTTDPFTADVNSDDSTKILAQKLQSAGVSSGTT 120 QSA+K+LT+ASFS+QK+++SNAGTGT LTTDPFTAD N+D+STK+LAQKLQSAG ++G T Sbjct: 61 QSALKTLTAASFSAQKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQT 120 Query: 121 YNAGDSIAIKIGTNSPTFITLQANSTLAGVRDAINASKAGVTASITTDASGDHLVLESAT 180 +NAGDS+AIK+GTN PTFITLQAN+TLAGVRDAINA+KAGVTASITTD SGDHLVLES T Sbjct: 121 FNAGDSVAIKVGTNQPTFITLQANATLAGVRDAINAAKAGVTASITTDGSGDHLVLESNT 180 Query: 181 GGTANTIKVTANNSLSAFAYDPSSSTPSTMTQIQAPRDATKAASGTYSVAVSQLAQTAKL 240 GGTANTIK+TANNSLS+ AYDPSS+ ST+TQIQAPRDA+KAA+G Y++AV+QLAQ K+ Sbjct: 181 GGTANTIKITANNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKV 240 Query: 241 SSASITPGTTFDNGILAIKTGTGSTAIIQPATNTLAGVRDAINSSDAGVNATIVSDGTND 300 SSA I PG+TFDNG+LAIKTG GSTAIIQP TN+LAGVRDAIN+SDAGVNA+IV+DGTND Sbjct: 241 SSAGIAPGSTFDNGVLAIKTGNGSTAIIQPKTNSLAGVRDAINASDAGVNASIVNDGTND 300 Query: 301 HLVITAKDSGAANTIKITGTGNYSVFSADPSGTVISPNVSTSQTYSSGTLSLKVGDTTVA 360 HLV+TAKD+G+ANT+++TGTGN++ F+ DPSGT+ + V+T+QTYSSG+L+L+VG + Sbjct: 301 HLVLTAKDAGSANTLRVTGTGNFAAFNFDPSGTITTTGVATNQTYSSGSLALQVGSKSFT 360 Query: 361 INPT-ANGSGNIDLNQVMSAINSASAGVTASISNDGTNNHLVLTPTGSSATAAVSLTGSG 419 INPT +GSG I LN VM AIN A+ GVTASI+NDG+ +HLVLTP+G T AV LTG+G Sbjct: 361 INPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKDHLVLTPSG---TDAVKLTGAG 417 Query: 420 DYSGLTMSGMGQLLKAQDAKLSIDGVAVTSTSNKVENAISGVTLNLAKVTTSSDNFTLNI 479 DYS L S MGQL KAQDAKL++DGV VTSTSNKV N ISGVTLNL+KVTTS+DNF+L+I Sbjct: 418 DYSDLAGSSMGQLAKAQDAKLTVDGVTVTSTSNKVTNVISGVTLNLSKVTTSADNFSLSI 477 Query: 480 SNDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANNSAPLASESSVQTIMNQLR 539 +NDTSG++TAAN+FVTAYNTLAKAVA +T QTPSTT GQA+ +PLASESSV +M Q+R Sbjct: 478 NNDTSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVR 537 Query: 540 NTLFATVDGGNGISSLSDIGISFQKDGTLALDSTKLATAATNNFAGIANLFTGTDPDTTN 599 NT+ + G NG ++LS IGISFQKDGTLALD+TKL AA +F GI LF Sbjct: 538 NTMLGAL-GDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLF--------- 587 Query: 600 TTSSKNGIVTKLQTLMTSLLSDSGIIASKTNGLQASLKINQDRQTTVQTRLSNLKDDYTN 659 TS+ NG+V KLQ LM +L +SG++ASKT GLQ SLKI D+QT RL +LKD YTN Sbjct: 588 -TSATNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTN 646 Query: 660 QFNRLNVTLASMQSTQSYLTQQLASLAKSS 689 QFNRLNVTLA+MQS QSYLTQQLA L+KSS Sbjct: 647 QFNRLNVTLATMQSRQSYLTQQLAKLSKSS 676 >gi|300312832|ref|YP_003776924.1| flagellar capping protein [Herbaspirillum seropedicae SmR1] Length = 680 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/694 (54%), Positives = 508/694 (73%), Gaps = 22/694 (3%) Query: 1 VATSTGTISTSAGPLDVSTLVSQLISAESQTQLTPLTTQASSYNTLISAYGSLKSALSSY 60 +ATSTG+ISTSAGPLDV+ LV+QL+S ES+++LTPL ++A S+N LISAYG L +AL++Y Sbjct: 1 MATSTGSISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTY 60 Query: 61 QSAIKSLTSASFSSQKSSVSNAGTGTTLTT--DPFTADVNSDDSTKILAQKLQSAGVSSG 118 Q+A+ LT+A FS+QK++VSN G + + D +AD+NSD STK AQ ++SAG +SG Sbjct: 61 QNALAELTAAKFSAQKAAVSNTGRSSDGKSGNDAVSADINSDASTKAQAQIIKSAGFASG 120 Query: 119 TTYNAGDSIAIKIGTNSPTFITLQANSTLAGVRDAINASKAGVTASITTDASGDHLVLES 178 + AGDS+AIK+G SP FITL+A++T+ G+RD INA++AGVTAS+ D +GDHLVLES Sbjct: 121 HLFKAGDSVAIKVGEASPHFITLKADATINGLRDTINAARAGVTASVVRDDAGDHLVLES 180 Query: 179 ATGGTANTIKVTANNSLSAFAYDPSSSTPSTMTQIQAPRDATKAASGTYSVAVSQLAQTA 238 T GTAN +KV ANNSLSA ++D S P MTQ QA RDAT AA G+Y+++V QLAQ+ Sbjct: 181 NTAGTANLLKVRANNSLSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAISVEQLAQSH 240 Query: 239 KLSSASITPGTTFDNGILAIKTGTGSTAIIQPATNTLAGVRDAINSSDAGVNATIVSDGT 298 KLSSA I PG+TFD G+LAIK G+GST +I+PA+NTLAGVRDAIN++ AGVNA+IVSDG Sbjct: 241 KLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGVNASIVSDGK 300 Query: 299 NDHLVITAKDSGAANTIKITGTGNYSVFSADPSGTVISPNVSTSQTYSSGTLSLKVGDTT 358 +HLV+TAK+SGA N ++I+GTG+++VFS+DPSG + +V+ + +S G ++L VG T Sbjct: 301 QEHLVLTAKESGANNALRISGTGDFAVFSSDPSGNASTASVTPEKRFSQGAVNLSVGART 360 Query: 359 VAINPTANGSGNID-LNQVMSAINSASAGVTASISNDGTNN----HLVLTPTGSSATAAV 413 +++ P + +G L V AIN A AGV+A++ +G + LVL+ +GS V Sbjct: 361 ISLKPASATAGAAPGLADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSD---PV 417 Query: 414 SLTGSGDYSGLTMSGMGQLLKAQDAKLSIDGVAVTSTSNKVENAISGVTLNLAKVTTSSD 473 SL GSGDY+ L S MGQL K QDA+LSIDGVA+T+TSN +++AISGVTLNL K T+++D Sbjct: 418 SLRGSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATD 477 Query: 474 NFTLNISNDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANNSAPLASESSVQT 533 TL ISND+SG+ A NSFV A+NTLAKA+A MT Q P+ GQA LA ES V+ Sbjct: 478 KLTLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGLLAGESMVRA 537 Query: 534 IMNQLRNTLFATVDGGNGISSLSDIGISFQKDGTLALDSTKLATAATNNFAGIANLFTGT 593 + +LRN + A++ GN + SL+ IG+ F+KDGTL LDS +LA A NF +A LF G Sbjct: 538 LTGELRNAVLASMP-GNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAG- 595 Query: 594 DPDTTNTTSSKNGIVTKLQTLMTSLLSDSGIIASKTNGLQASLKINQDRQTTVQTRLSNL 653 K G+V + ++L+ +L + G++A KT GLQ SLKI D+Q + RL+NL Sbjct: 596 ----------KEGLVARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANL 645 Query: 654 KDDYTNQFNRLNVTLASMQSTQSYLTQQLASLAK 687 +D YTNQFNRLNVTL+ MQ++Q+YLTQQLA L + Sbjct: 646 RDSYTNQFNRLNVTLSKMQASQNYLTQQLARLRR 679 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.304 0.118 0.301 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,624,652 Number of extensions: 61130 Number of successful extensions: 284 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 237 Number of HSP's successfully gapped: 9 Length of query: 689 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 597 Effective length of database: 1,184,250 Effective search space: 706997250 Effective search space used: 706997250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (22.0 bits) S2: 134 (56.2 bits)