BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0382.p (660 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 1102 0.0 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 273 3e-74 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 220 3e-58 gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 153 4e-38 gi|300313205|ref|YP_003777297.1| TPR repeat containing protein [... 63 8e-11 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 1102 bits (2849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 518/658 (78%), Positives = 586/658 (89%), Gaps = 2/658 (0%) Query: 1 MSTRKSSNKHGKHIPAPAAAKSNLQDLLDVRKCLDLLDNRKTEEAKTICTAVLARAPNLV 60 MSTRK+SNKHGK PA K LQDLLDVRK LDLLD+RKT+EAK +C AVL+R P LV Sbjct: 1 MSTRKNSNKHGK--PATPPPKHPLQDLLDVRKALDLLDSRKTDEAKALCMAVLSRNPTLV 58 Query: 61 FANHARGLIAMQEGQFAQAEQYLRKAIEADPNNAEYLSNLAGTVLSQDRIDESIAIYERA 120 FANHARGL+AM EG+FA AE YLRKAIEADP NAEY+SNLAGTVLSQDRIDE+IA+YE A Sbjct: 59 FANHARGLVAMHEGKFADAEAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAIALYEHA 118 Query: 121 IAIDKENRAARIGLANALHEKNDPEASIKYFEDAARREPNAPGPLSHLGRALIDARRFDE 180 I ID+++RA+RIGLANALHEKNDPEAS+ YFEDA +REPNAPGPLSHLGRALI+ +R++E Sbjct: 119 IRIDRDHRASRIGLANALHEKNDPEASVAYFEDAVKREPNAPGPLSHLGRALIECKRYNE 178 Query: 181 AVATILKSLEYQINFAPSHTALGEAFHAMEMYKEAVESHKTAILLDPQDTYAHNKIADSY 240 AVA ILKSLE QI+FAPSHTALGEAFHAMEMYKEA+ESHKTAILLDPQDTYAHNKIADSY Sbjct: 179 AVAVILKSLELQISFAPSHTALGEAFHAMEMYKEAIESHKTAILLDPQDTYAHNKIADSY 238 Query: 241 LKINKIDEAHEHLLRVIEIAPKDPNGYVKLGSSYFNTGDRFDDAMRMFKQALALDPKHAL 300 LK+N+IDEAHEHLLRVIEIAPKDPN YVKLGSSYF+T DRFDDAMRMF +AL +D KHAL Sbjct: 239 LKLNRIDEAHEHLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHAL 298 Query: 301 TYNNIGAIQHDHGDYDDALGNFRTALALRPNYPTAKHNLALTLLLRGQFEEGWECHESRL 360 TYNNIGAIQHDHGD +DA+GNFR AL LRPNYPTA+HN+AL+LLL+G +EGWECHESRL Sbjct: 299 TYNNIGAIQHDHGDLEDAIGNFRKALELRPNYPTARHNIALSLLLQGHLKEGWECHESRL 358 Query: 361 TTKERAHVYRLIHKLFEVIPKWDGKSSLAGKRILLMHEQGFGDSIQFLRYARLLMEQGAS 420 T+ER+HVYRLIHKLF++IPKWDGKSSLAGK ILLMHEQGFGDSIQFLRY R++++QGA Sbjct: 359 VTRERSHVYRLIHKLFDLIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGAR 418 Query: 421 VALHVKNPLYRLFQSFTPAVTLVRESDPLPPCDCAYVLMSLPYALRTHSVEDIPRYAEGY 480 VALHVKNPLYRLFQS++P VTLVRESDPLPPCDCAYVLMSLPYA+ T +V+DIP GY Sbjct: 419 VALHVKNPLYRLFQSYSPEVTLVRESDPLPPCDCAYVLMSLPYAMGTDTVDDIPSVPGGY 478 Query: 481 LSADASLAAHWKQKISTLTRSADNLRVGIVWGGNPEHGNDRHRSIPLEKVKQLFEIPRME 540 LSAD L + W +KI L++S + LRVG+VWGGNPEHGNDRHRSI ++K LF++P +E Sbjct: 479 LSADPILKSSWGEKIRQLSQSPEKLRVGVVWGGNPEHGNDRHRSIAMDKFATLFQLPNIE 538 Query: 541 FYSLQKGKPADGLKELPTDWPVFDLGNECQDFADTAAAISNLDLVICVDTSVAHLAGALG 600 FYSLQKGKP D K LP P+F+LG++CQDFADTAAAI+NLDLV+ VDTSV HLAGALG Sbjct: 539 FYSLQKGKPLDAFKALPPGLPIFNLGDDCQDFADTAAAIANLDLVVSVDTSVVHLAGALG 598 Query: 601 HPTWVLLPHVPDWRWLNDRDDSPWYPGMRLFRQPAVSDWDSVLKKVGEELTLLQQKKA 658 HPTWVLLPHVPDWRWL DR+DSPWYPGMRLFRQPA+SDW+SVL KVG+EL LQQKKA Sbjct: 599 HPTWVLLPHVPDWRWLQDREDSPWYPGMRLFRQPALSDWESVLTKVGQELVALQQKKA 656 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 273 bits (698), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 212/639 (33%), Positives = 311/639 (48%), Gaps = 61/639 (9%) Query: 21 KSNLQDLLDVRKCLDLLDNRKTEEAKTICTAVLARAPNLVFANHARGLIAMQEGQFAQAE 80 ++N +L ++K L L + A+ + VL + P AN+ G++ + + + AE Sbjct: 4 QANANQIL-LQKALALHQKGQLAPAEELYKKVLVKLPRHFEANYLYGMLKLHQEDWETAE 62 Query: 81 QYLRKAIEADPNNAEYLSNLAGTVLSQDRIDESIAIYERAIAIDKENRAARIGLANALHE 140 L KAIE +P++ + + AG + R DE++A Y+ + ++ + A + AL Sbjct: 63 AQLAKAIELNPDHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAAL-- 120 Query: 141 KNDPEASIKYFEDAARREPNAPGPLSHLGRALIDARRFDEAVATILKSLEYQINFAPSHT 200 RR LGR EA+A + ++ + A + Sbjct: 121 ---------------RR----------LGRN-------REALADLERATALAPDNADAWF 148 Query: 201 ALGEAFHAMEMYKEAVESHKTAILLDPQDTYAHNKIADSYLKINKIDEAHEHLLRVIEIA 260 G H Y +A ES++ A+ L P A + ++ N++D+A R +E+ Sbjct: 149 QRGNVLHDSYAYGDARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQ 208 Query: 261 PKDPNGYVKLGSSYFNTGDRFDDAMRMFKQALALDPKHALTYNNIGAIQHDHGDYDDALG 320 P G F R +A++ + +ALALD + + N G+ +++A Sbjct: 209 PDFFEAISNRGYVLFKM-QRPAEALQAYDRALALDERAPDLWFNRGSTLEQLYRFEEASE 267 Query: 321 NFRTALALRPNYPTAKHNLALTLLLRGQFEEGWECHESRLTTKERAHVYRLIHKLFEVIP 380 ++R A AL+P+ +A N AL L +G F GW+ E+R T++ R + P Sbjct: 268 SYRRAKALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWATEQMRGQQRQFMQ-----P 322 Query: 381 KWDGKSSLAGKRILLMHEQGFGDSIQFLRYARLLMEQGASVALHVKNPLYRLFQSFTPAV 440 W G+ L GK ILL EQGFGD++QF+RYA LL +GA V L V+ L R P V Sbjct: 323 LWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARGARVILEVQPALTRQLAGL-PGV 381 Query: 441 TLVRESDPL--PPCDCAYVLMSLPYALRTHSVEDIPRYAEGYLSADASLAAHWKQKISTL 498 T V +D PP D LMSLP A +T S DIPR YL +AS A W Q++ Sbjct: 382 TQVIGTDHFMRPPFDFHCPLMSLPLACKTFSEADIPRAP--YLLPEASSWAAWHQRLPR- 438 Query: 499 TRSADNLRVGIVWGGNPEHGN------DRHRSIPLEKVKQLFEIPR----MEFYSLQKGK 548 R+ LRVG+VW G+ + D RS+P + L E+ R +EFYSLQ G+ Sbjct: 439 NRA---LRVGLVWAGSSAQTHPDAVRIDGERSLPFATLAPLVELAREHAALEFYSLQVGQ 495 Query: 549 PADG-LKELPTDWPVFDLGNECQDFADTAAAISNLDLVICVDTSVAHLAGALGHPTWVLL 607 A L P V D E DFA+T A ++NLDL+I VDTSV HLAGALG P W+L Sbjct: 496 DAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSVCHLAGALGRPVWLLN 555 Query: 608 PHVPDWRWLNDRDDSPWYPGMRLFRQPAVSDWDSVLKKV 646 H WRW +R+DSPWY GM +F Q WD V+ +V Sbjct: 556 RHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARV 594 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 220 bits (560), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 185/582 (31%), Positives = 285/582 (48%), Gaps = 59/582 (10%) Query: 76 FAQAEQYLRKAIEADPNNAEYLSNLAGTVLSQDRIDESIAIYERAIAIDKENRAARIGLA 135 +A+A+ L ++A P + + L L +Q R E+ +++A+ + Sbjct: 19 YAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAWQQALRL------------ 66 Query: 136 NALHEKNDPEASIKYFEDAARREPNAPGPLSHLGRALIDARRFDEAVATILKSLEYQINF 195 L ++ +++Y LGRA + RF++A + +E Sbjct: 67 --LPPDSEEALALRY----------------RLGRAFYEEGRFEDAFLLYRELIESGWQL 108 Query: 196 APSHTALGEAFHAMEMY----KEAVESHKTAILLDPQDTYAHNKIADSYLKINKIDEAHE 251 A A M +A+ + A+ DP ++ A + + + D A + Sbjct: 109 PELFVAAAAALQGMSPSGKNDPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQ 168 Query: 252 HLLRVIEIAPKDPNGYVKLGSSYFNTGDRFDDAMRMFKQALALDPKHALTYNNIGAIQHD 311 + + + + + ++ G G +F++A+R + QAL L P+ + + G Sbjct: 169 CIHQALRLDDQRAQYWLAAGLVEHAQG-QFEEALRYYDQALILAPELVDAHVSRGTTLAR 227 Query: 312 HGDYDDALGNFRTALALRPNYPTAKHNLALTLLLRGQFEEGWECHESRLTTKERAHVYRL 371 +++A+ ++R AL + A NLAL+LL+ G+ E+ W +E R + A YR Sbjct: 228 LRQHEEAIDSYRRALRIDDKDADAHLNLALSLLVLGRLEQAWPLYEWRWEGRS-ADPYR- 285 Query: 372 IHKLFEVIPKWDGKSSLAGKRILLMHEQGFGDSIQFLRYARLLMEQGASVALHVKNPLYR 431 IP W+G SSLAGKRILL EQG GD+IQF RY L+++ GA V L V L Sbjct: 286 ----HATIPAWNGGSSLAGKRILLWAEQGQGDTIQFSRYVALILQAGAQVVLEVPASLLA 341 Query: 432 LFQSF---TPAVTLVRESDPLPPCDCAYVLMSLPYALRTHSVEDIPRYAEGYLSADASLA 488 L S TP +TLV +PLP D LMSLP T + +DIP A YL AD + Sbjct: 342 LMHSLAVPTP-LTLVAMGEPLPEVDFQLPLMSLPLVCNTRA-DDIP-AAVPYLCADPARR 398 Query: 489 AHWKQKISTLT-RSADNLRVGIVWGGNPEHGNDRHRSIPLEKVKQL-FEIPRMEFYSLQK 546 W+++++TL RS +R+G+V GN + ND RSI L + L P+++F+ +Q Sbjct: 399 ILWEERLATLAPRSPARMRIGLVCSGNAGNVNDARRSIELSRFAPLALARPQLDFFVIQP 458 Query: 547 GKPADGLKELPTDW----PVFD-LGNECQDFADTAAAISNLDLVICVDTSVAHLAGALGH 601 L++ W P + +G DFADTAA ++ +DLVI VDT+ AHLAGA+ Sbjct: 459 D-----LRQADRQWCEQQPGWHWVGAAINDFADTAAVLAGMDLVISVDTAAAHLAGAMAC 513 Query: 602 PTWVLLPHVPDWRWLNDRDDSPWYPGMRLFRQPAVSDWDSVL 643 P W+ LP+ PDWRWL + DSPWYP RLFRQ WD V+ Sbjct: 514 PVWIALPYAPDWRWLLNAADSPWYPTARLFRQQQPGAWDDVI 555 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 153 bits (386), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 123/388 (31%), Positives = 172/388 (44%), Gaps = 26/388 (6%) Query: 279 DRFDDAMRMFKQALALDPKHALTYNNIGAIQHDHGDYDDALGNFRTALALRPNYPTAKHN 338 +R ++A+ + A D AL N+ I G + A F AL P++P A+ Sbjct: 157 NRHEEALECYPPAADEDQARALHAFNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVG 216 Query: 339 LALTLLLRGQFEEGWECHESRLTTKERAHVYRLIHKLFEVIPKWDGKSSLAGKRILLMHE 398 A LL + + EGW HE+R E A + P+W + GKR+LL E Sbjct: 217 RAHMLLSQQHYAEGWRAHEARFGIAELAR-----RGIDSPRPRWRAGEPVRGKRVLLWAE 271 Query: 399 QGFGDSIQFLRYARLLMEQGASVALHVKNPLYRLFQSFTPAVTLVRESDPLPPCDCAYVL 458 QG GD++QF RY L+ +Q A V+L L + P V + P D L Sbjct: 272 QGQGDTLQFARYIPLVAQQAAEVSLCAPASLLAVLAPCLPQVRCMANPGEAPDHD----L 327 Query: 459 MSLPYALRTHSVEDIPRYA--EGYLSADASLAAHWKQKISTLTRSADNL-RVGIVWGGNP 515 + +L PR YL+A W+ +S L + R+GI W G Sbjct: 328 HASLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQQWQAYLSALWPAMPRRPRLGIAWAGRQ 387 Query: 516 EHGNDRHRSIPLEKVKQLFEIPRMEFYSLQKGKPADGLKELPTDWPVFDLGNECQ----- 570 R IPL+ + L+ +P +F SLQ PA T L Sbjct: 388 YATVHHSRDIPLDALAPLWTLP-ADFVSLQVEVPAGDQAAHAT------LAQRLHTPTLV 440 Query: 571 DFADTAAAISNLDLVICVDTSVAHLAGALGHPTWVLLPHVPDWRWLNDRDDSPWYPGMRL 630 D+ADTAA + LDLVI VDT+V HLAGALG P + L + +WRW +PWYP ++L Sbjct: 441 DWADTAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYDGEWRWGVKGSQTPWYPSLQL 500 Query: 631 FRQPAVSDWDSVLKKVGEELT--LLQQK 656 RQ W V++++ T LLQ K Sbjct: 501 LRQRERGQWGPVVEEMLAVCTQRLLQPK 528 >gi|300313205|ref|YP_003777297.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 600 Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 83/329 (25%), Positives = 145/329 (44%), Gaps = 49/329 (14%) Query: 36 LLDNRKTEEAKTICTAVL---ARAPNLVFANHARGLIAMQEGQFAQAEQYLRKAIEADPN 92 L++ + ++A+T A+L P +FA G+++ Q Q AE YL++ Sbjct: 281 LVEQKDYKDARTQFEALLKEDGEDPTTLFA---LGVLSAQTDQLKDAEYYLQR------- 330 Query: 93 NAEYLSNLAGTVLSQDRIDESIAIYERAIAIDKENRAARIGLANALHEKNDPEASIKYFE 152 YL L+ + +DR D S AI + L+ E+ D + +++Y + Sbjct: 331 ---YLQVLSA-MPEEDR-DPSQAI---------------LLLSRIAEERRDIDGALRYLD 370 Query: 153 DAARREPNAPGPLS-HLGRALIDARRFD-EAVATILKSLEYQINFAPSHTALGEAFHAM- 209 R EP G ++ + RA + AR+ D E L++ + + L +A A+ Sbjct: 371 ---RGEPGTEGYVNIQVRRAQLLARKSDIEGARKALEAAQSESTNDGEQLQLLQAESALL 427 Query: 210 ---EMYKEAVESHKTAILLDPQDT---YAHNKIADSYLKINKIDEAHEHLLRVIEIAPKD 263 +EA + K + P +T Y + + D K+ K DE L RVI++AP + Sbjct: 428 RDANRNQEAADVIKAGLERFPNNTDLLYDYAMVLD---KLGKYDEMEASLRRVIKLAPGN 484 Query: 264 PNGYVKLGSSYFNTGDRFDDAMRMFKQALALDPKHALTYNNIGAIQHDHGDYDDALGNFR 323 + Y LG S + R +A+ + ++A + P+ A +++G + G D+A R Sbjct: 485 QHAYNALGYSLADRNVRLPEALELIRKAAEMAPEDAFIADSLGWVLFRMGRLDEAETQMR 544 Query: 324 TALALRPNYPTAKHNLALTLLLRGQFEEG 352 A LRP+ H L L RG+ +E Sbjct: 545 RAYGLRPDAEIGVH-LGEVLWTRGKQDEA 572 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,106,134 Number of extensions: 91135 Number of successful extensions: 340 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 291 Number of HSP's successfully gapped: 8 Length of query: 660 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 569 Effective length of database: 1,188,985 Effective search space: 676532465 Effective search space used: 676532465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)