BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0381.p
         (218 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311389|ref|YP_003775481.1| SOS-response transcription repr...   404   e-114
gi|300312765|ref|YP_003776857.1| SOS mutagenesis protein [Herbas...    54   7e-09

>gi|300311389|ref|YP_003775481.1| SOS-response transcription
           repressor [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  404 bits (1038), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/218 (91%), Positives = 209/218 (95%), Gaps = 2/218 (0%)

Query: 1   MLKLTARQEQILNLIKNAIENTGFPPTRAEIAAELGFRSANAAEEHLQALARKGAIEISP 60
           MLKLTARQEQILNLIKNAIENTGFPPTRAEIAAELGFRSANAAEEHLQALARKGAIEISP
Sbjct: 1   MLKLTARQEQILNLIKNAIENTGFPPTRAEIAAELGFRSANAAEEHLQALARKGAIEISP 60

Query: 61  GTSRGIRLRESGTTGISTARQMALPHPALMQLSLPLIGRVAAGSPILAQEHVEKTYQVDP 120
           GTSRGIRLRE G  G + +RQMALPHPALMQLSLPLIGRVAAGSPILAQEHVEKTYQVDP
Sbjct: 61  GTSRGIRLREPG--GQAASRQMALPHPALMQLSLPLIGRVAAGSPILAQEHVEKTYQVDP 118

Query: 121 AMFPAKPDYLLKVRGMSMRDAGILDGDLLAVRRADQARNGQIVVARLADEVTVKRYQKSG 180
           AMF  KPDYLLKVRGMSMRDAGILDGDLLAVR+ DQARNGQIVVARLADEVTVKRYQK+G
Sbjct: 119 AMFSGKPDYLLKVRGMSMRDAGILDGDLLAVRKTDQARNGQIVVARLADEVTVKRYQKTG 178

Query: 181 SVITLFPENPEFEPIIVKPEDDQFALEGLAVGLLRSWN 218
           SVITLFPENP+F+PIIVKP ++QFALEGLAVGL+RSWN
Sbjct: 179 SVITLFPENPDFKPIIVKPNEEQFALEGLAVGLMRSWN 216


>gi|300312765|ref|YP_003776857.1| SOS mutagenesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 141

 Score = 54.3 bits (129), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 129 YLLKVRGMSMRDAGILDGDLLAVRRADQARNGQIVVARLADEVTVKRYQKSGSVITLFPE 188
           +L  V G SM  A I++GD + V R+   + G IVVA +  E T+KR +       L PE
Sbjct: 53  FLFDVAGWSMSGAHIVEGDKVVVDRSVSPQPGHIVVAIVNGEFTIKRLRLVNGAYELHPE 112

Query: 189 NPEFEPIIVKPEDDQFALEGLAVGLLR 215
           NP+F PI    + +   + G+ VG+ R
Sbjct: 113 NPDFRPIRFG-DGEVLEVFGVVVGVAR 138


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 703,987
Number of extensions: 29734
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 218
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,231,600
Effective search space: 167497600
Effective search space used: 167497600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)