BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0371.p
         (147 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311399|ref|YP_003775491.1| bacterioferritin comigratory ox...   296   5e-82
gi|300309725|ref|YP_003773817.1| bacterioferritin comigratory pr...    54   5e-09

>gi|300311399|ref|YP_003775491.1| bacterioferritin comigratory
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score =  296 bits (757), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 139/147 (94%), Positives = 143/147 (97%)

Query: 1   VPDFSAAMTSGKTFNLADYRGKNLVLYFYPKDNTPGCTTEGMQFRDLHPQFQAANTDIFG 60
           VPDFSAAMTSGKTF LADY+GKNLVLYFYPKDNTPGCTTEGMQFRDLH QFQAANT+IFG
Sbjct: 12  VPDFSAAMTSGKTFQLADYQGKNLVLYFYPKDNTPGCTTEGMQFRDLHAQFQAANTEIFG 71

Query: 61  ISRDSLKSHENFKGKLGMPFELISDPDETLCTMFDVMKMKNMYGKQVRGVERSTFVIDAA 120
           +SRDSLKSHENFK KLGMPFELISDPDETLCTMFDVMKMKNMYGKQVRGVERSTFVID A
Sbjct: 72  VSRDSLKSHENFKAKLGMPFELISDPDETLCTMFDVMKMKNMYGKQVRGVERSTFVIDGA 131

Query: 121 GKVVKEWRGVKVPAHVDEVLAFIKTLA 147
           GKVVKEWRGVKVPAHVDEVLAFI+TLA
Sbjct: 132 GKVVKEWRGVKVPAHVDEVLAFIQTLA 158


>gi|300309725|ref|YP_003773817.1| bacterioferritin comigratory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score = 53.9 bits (128), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 12/145 (8%)

Query: 2   PDFSAAMTSG---KTFNLADYRGKN-LVLYFYPKDNTPGCTTEGMQFRDLHPQFQAANTD 57
           P+FSA  + G    TF L++   K  +VLYFYP   T GCT E   F +   +++A    
Sbjct: 45  PEFSAPASLGGQVSTFTLSEALKKGPVVLYFYPAAFTSGCTIEAHLFAEAVDRYKALGAT 104

Query: 58  IFGISRDSLKSHENFK-GKLGMPFELISDPDETLCTMFDVMKMKNMYGKQVRG-VERSTF 115
           + G+S D++++   F   +    F + +D D+ +   +D   +K      V G   R+++
Sbjct: 105 VIGVSGDNIETLNKFSVSECRSKFAVAADVDKKIMKAYDAQFLK------VTGYASRTSY 158

Query: 116 VIDAAGKVVKEWRGVKVPAHVDEVL 140
           VI     ++ E+  +    HV+  +
Sbjct: 159 VITPDHAILYEYTDMNPEKHVENTM 183


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 445,537
Number of extensions: 16198
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 147
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,255,275
Effective search space: 87869250
Effective search space used: 87869250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)