BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0370.p
         (296 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311400|ref|YP_003775492.1| xylanase/chitin deacetylase [He...   554   e-159

>gi|300311400|ref|YP_003775492.1| xylanase/chitin deacetylase
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score =  554 bits (1428), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 263/296 (88%), Positives = 278/296 (93%)

Query: 1   VGVPNLINQLRRHRAGATFLFSLGPDHTGWALKQIFRPGFFSKVSRTSVVEHYGIKTLMY 60
           VGVPNLI+QLRRH AGATFLFSLGPDHTGWALKQIFRPGFFSKVSRTSVVEHYGIKTLMY
Sbjct: 18  VGVPNLISQLRRHGAGATFLFSLGPDHTGWALKQIFRPGFFSKVSRTSVVEHYGIKTLMY 77

Query: 61  GTLLPAPDIGKTCADFMRSARDAGFECGIHTWDHRVWQDDVRTADAQWTVETMHKSHARY 120
           GTLLPAPDIGKTCADFMR A  AGFECGIHTWDHRVWQD+VRTADAQWT ETM +++ RY
Sbjct: 78  GTLLPAPDIGKTCADFMRQAHAAGFECGIHTWDHRVWQDNVRTADAQWTTETMQQAYGRY 137

Query: 121 REIFGEAPRTHGAAGWQMNDHAFVQLDQFGMAYSSDGRSQLRENGRLADADAGPHRLSAF 180
            +IFG APRTHGAAGWQMNDHAFVQLDQFG+AYSSDGRSQLRE+G LAD DAGPHRLS F
Sbjct: 138 HDIFGHAPRTHGAAGWQMNDHAFVQLDQFGIAYSSDGRSQLREDGSLADQDAGPHRLSVF 197

Query: 181 GKPLSCVQLPTTLPTLDEILGREIGGKMIDAGNAAEFLLQLTKEPRDHVFTLHAELEGQK 240
           GKPLSCVQLPTTLPTLDEILGR I GK+IDAGNAAE LL+LTK PRDHVFTLHAELEGQK
Sbjct: 198 GKPLSCVQLPTTLPTLDEILGRTIRGKLIDAGNAAELLLELTKTPRDHVFTLHAELEGQK 257

Query: 241 LGPIFEQLLTGWRAQGYELVSMGDYYQSIKNDVLPILPIAWGELPGRSGEMIVQAM 296
           L PIFE+LL GWRAQGYELVSMGDYYQSI+NDVLPILPI+WGELPGRSG+MI+QAM
Sbjct: 258 LAPIFERLLAGWRAQGYELVSMGDYYQSIQNDVLPILPISWGELPGRSGDMILQAM 313


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,047,272
Number of extensions: 45228
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,217,395
Effective search space: 256870345
Effective search space used: 256870345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)