BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0359.p
         (178 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311411|ref|YP_003775503.1| hypothetical protein Hsero_2095...   308   2e-85

>gi|300311411|ref|YP_003775503.1| hypothetical protein Hsero_2095
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  308 bits (788), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 150/181 (82%), Positives = 159/181 (87%), Gaps = 3/181 (1%)

Query: 1   MLRHFVQRRQD---GGNVCTLATSKMHFKLKRMENGMNHKIKTLLAAAGLFGTLLASLPA 57
           MLRHF+  R      GNVCT A SK  FKL +  NGMN KIKTLLA AGLFG +LASLPA
Sbjct: 9   MLRHFLLCRPVSLLAGNVCTQAPSKTLFKLNKDGNGMNIKIKTLLATAGLFGAVLASLPA 68

Query: 58  HAENWQSLGGSDTSELLVDTDSIVESGGIREAWSMWNFKEARPNNGDKSFPALKSYKDLH 117
           HAENWQSLGG+D +ELL+DTDSIVESGG+REAWS+WNFKEARPNNGDKSFP LKSYKDLH
Sbjct: 69  HAENWQSLGGTDQAELLIDTDSIVESGGVREAWSLWNFKEARPNNGDKSFPTLKSYKDLH 128

Query: 118 QYNCKAGSMKLVREIIFAENDGKGDKRDHSDALKGQEFIKPKPMSVGDAMLQAVCNFELK 177
           QYNCKAG+MKLVREIIFAENDGKGDKRDHSDALKG EFIKPKPMSVGDAMLQAVC FELK
Sbjct: 129 QYNCKAGTMKLVREIIFAENDGKGDKRDHSDALKGMEFIKPKPMSVGDAMLQAVCTFELK 188

Query: 178 K 178
           K
Sbjct: 189 K 189


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 515,664
Number of extensions: 17744
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 99
Effective length of database: 1,245,805
Effective search space: 123334695
Effective search space used: 123334695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)