BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0357.p
         (415 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis prot...   752   0.0  
gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA...   254   8e-69

>gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/429 (88%), Positives = 391/429 (91%), Gaps = 18/429 (4%)

Query: 1   MSSTPTPSAAPSSDKPARPPMQSVSQALDTLLSAAVPVVESETVDTLEACGRVLAAPVTA 60
           MSSTP  S  PSS KPAR PMQSVSQAL+TLLSAAVPV + E +DTL+AC RVLA PVTA
Sbjct: 1   MSSTPNSSTPPSSAKPARAPMQSVSQALETLLSAAVPVAQREIIDTLDACERVLAEPVTA 60

Query: 61  SIDVPGMDNSQMDGYAVRAADCASGQARLRVSQRIPAGHVGQPLEPGTAARIFTGAMMPQ 120
           SIDVPGMDNSQMDGYAVRAADCASGQARLRVSQRIPAGHVGQPLEPGTAARIFTGAMMP 
Sbjct: 61  SIDVPGMDNSQMDGYAVRAADCASGQARLRVSQRIPAGHVGQPLEPGTAARIFTGAMMPA 120

Query: 121 GADAVVMQEACETEGEHVVIRHVPKSGEWVRLIGEDIRQGSTILAAGTRLRPQELGLAAS 180
           GADAVVMQEACE +GEHVVIRHVP +GEWVR IGEDIRQGSTILAAGTRLRPQELGLAAS
Sbjct: 121 GADAVVMQEACEADGEHVVIRHVPAAGEWVRTIGEDIRQGSTILAAGTRLRPQELGLAAS 180

Query: 181 IGQAQLQVLRPVRVAVFFTGDELTMPGQPLKPGGIYNSNRFLLRGLLQKLGCQVSDFGIV 240
           IGQAQLQVLR VRVAVFFTGDELTMPGQPLKPGGIYNSNRFLLRGLLQKLGCQVSDFGIV
Sbjct: 181 IGQAQLQVLRRVRVAVFFTGDELTMPGQPLKPGGIYNSNRFLLRGLLQKLGCQVSDFGIV 240

Query: 241 PDSLEATRQTLREAAREHDLIITSGGVSVGEEDHVKPAVEAEGRINMWQIAMKPGKPLAF 300
           PDSL+ATR+TLREAAREHDLIITSGGVSVGEEDHVKPAVEAEGRINMWQIAMKPGKPLAF
Sbjct: 241 PDSLQATRETLREAAREHDLIITSGGVSVGEEDHVKPAVEAEGRINMWQIAMKPGKPLAF 300

Query: 301 GQVRRGQGAGEQGSEAFFLGLPGNPVSSFVTFLLFVRPFILRLQGLPREAVLPQPVAMRA 360
           GQVRRG+G G    EAFF+GLPGNPVSSFVTFLLFVRPF+LRLQGLPREAVLPQ VA+RA
Sbjct: 301 GQVRRGEGTG----EAFFMGLPGNPVSSFVTFLLFVRPFLLRLQGLPREAVLPQAVALRA 356

Query: 361 DFDWPRADRX--------------DLFPSQGSAVLTSTAWADGLIDNPPGQTIAAGDTVQ 406
           DFDWPRADR               DLFPSQGSAVLTSTAWADGLIDNPPGQTIAAGD VQ
Sbjct: 357 DFDWPRADRRQEFLRVRRNAQGGLDLFPSQGSAVLTSTAWADGLIDNPPGQTIAAGDMVQ 416

Query: 407 FLAFDHLLN 415
           FLAFDHLLN
Sbjct: 417 FLAFDHLLN 425


>gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA
           protein [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  254 bits (650), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 170/421 (40%), Positives = 228/421 (54%), Gaps = 35/421 (8%)

Query: 19  PPMQSVSQALDTLLSAAVPVVESETVDTLEACGRVLAAPVTASIDVPGMDNSQMDGYAVR 78
           P   +V +A   +     P+   E +    A  RVLA  + + IDVP  DNS MDGYA+R
Sbjct: 18  PHAMTVERAQAVIREFIHPIEAVEKLPIRSALSRVLAQDIVSRIDVPAHDNSAMDGYALR 77

Query: 79  AADCASG-QARLRVSQRIPAG--HVGQPLEPGTAARIFTGAMMPQGADAVVMQEACETEG 135
             D A G + RL++   + AG    GQ + PG   RI TGA MP G D V+ QE      
Sbjct: 78  GEDLAEGRELRLQIIGEVHAGDRFTGQ-VGPGQCVRIMTGAPMPAGCDTVIPQELTVDAD 136

Query: 136 EHVVIRHVP----KSGEWVRLIGEDIRQGSTILAAGTRLRPQELGLAASIGQAQLQVLRP 191
           +  V   VP    ++G+  RL GED+  GS  L  G  LRP ++GL AS+G A+  V R 
Sbjct: 137 QSAVT--VPPGRVRAGDNRRLRGEDLALGSVALPRGRILRPSDIGLLASLGLAEAPVQRR 194

Query: 192 VRVAVFFTGDELTMPGQPLKPGGIYNSNRFLLRGLLQKLGCQVSDFGIVPDSLEATRQTL 251
           +RVA F TGDEL   G+PL  G +Y+SNR+ L G+L +LGC+V D G+VPD   A     
Sbjct: 195 LRVAFFSTGDELRSVGEPLDEGCVYDSNRYTLHGMLTRLGCEVLDMGVVPDDPAALEAAF 254

Query: 252 REAAREHDLIITSGGVSVGEEDHVKPAVEAEGRINMWQIAMKPGKPLAFGQVRRGQGAGE 311
           R A  E D +ITSGGVSVG  D+ K  + + G +  W+IAM+PG+PLAFG++R       
Sbjct: 255 RSACEEADAVITSGGVSVGAADYTKQIMASLGEMAFWKIAMRPGRPLAFGRIR------S 308

Query: 312 QGSEAFFLGLPGNPVSSFVTFLLFVRPFILRLQG-----LPREAVLPQPVAMRADFDWPR 366
           +G EA+  GLPGNPV+  V+F  FVR  +LRL G     LPR  V     A+R       
Sbjct: 309 RGREAYLFGLPGNPVAVTVSFSFFVRDALLRLAGAEAKPLPRLRV-KTATAIRKKAGRTE 367

Query: 367 ADRXDLFPS------------QGSAVLTSTAWADGLIDNPPGQ-TIAAGDTVQFLAFDHL 413
             R  L P             QGS +L S + A+ +I+    +  +AAG+ V  + FD L
Sbjct: 368 YQRGILAPDDSGNWSVRLTGMQGSGILRSMSDANCIIELEHDRGDVAAGEEVAVVLFDGL 427

Query: 414 L 414
           +
Sbjct: 428 V 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,352,327
Number of extensions: 61644
Number of successful extensions: 226
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 2
Length of query: 415
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,203,190
Effective search space: 393443130
Effective search space used: 393443130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)