BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0347.p
         (734 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311422|ref|YP_003775514.1| fusaric acid resistance membran...  1372   0.0  

>gi|300311422|ref|YP_003775514.1| fusaric acid resistance membrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 734

 Score = 1372 bits (3550), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/734 (93%), Positives = 714/734 (97%)

Query: 1   MNTPALSIKAQLREAATDWWRSDAPTWVYVFKMVFAGLLALGIGYGLDLESPRSALITVF 60
           M+ PAL  KA+LREAA DWWRSDAPTWVYVFKMV AGLLALGIGYGLDLESPRSALITVF
Sbjct: 1   MSNPALPFKAKLREAAADWWRSDAPTWVYVFKMVLAGLLALGIGYGLDLESPRSALITVF 60

Query: 61  IVMQPQSGMILAKSFYRVIGTLVGSAAVVVFVGLFAQTPELFLLASALWIGLCTVGSAHN 120
           IVMQPQSGMILAKSFYRVIGTLVGS A+VVFVGLFAQTPELFLLASALWIGLCTVGSAHN
Sbjct: 61  IVMQPQSGMILAKSFYRVIGTLVGSMAIVVFVGLFAQTPELFLLASALWIGLCTVGSAHN 120

Query: 121 RNFRSYGFVLSGYTVALIGLPSALHPAVTFDSVMTRVSEIMVGIVCVGLVSALVFPQASA 180
           RNFRSYGFVLSGYTVALIGLP+ALHPA+TFDSVMTRV+EIMVGIVCVGLVSALVFPQASA
Sbjct: 121 RNFRSYGFVLSGYTVALIGLPAALHPAITFDSVMTRVTEIMVGIVCVGLVSALVFPQASA 180

Query: 181 PGLVRIIRGRFTAFVDMVSATLGGTADRKQLEATNARFVGDIIGLEAMRSSAIFEDPEVR 240
           PGLVRIIRGRFTAFVD++SATLGG+ADRKQLEATNARFVGDIIGLEAMRS+AIFEDPEVR
Sbjct: 181 PGLVRIIRGRFTAFVDLISATLGGSADRKQLEATNARFVGDIIGLEAMRSAAIFEDPEVR 240

Query: 241 LRSGRLSRMNSEFMALSTRVHALHQLMNRLHANPAPSARVVIEAISPYYREVQPLLTRAS 300
           LRSGRL+RMNSEFMALSTR+HALHQLMNRLHANPA SA+VVI+AISPY+REVQPLLTRAS
Sbjct: 241 LRSGRLTRMNSEFMALSTRMHALHQLMNRLHANPAASAQVVIDAISPYFREVQPLLTRAS 300

Query: 301 GEPVMSALDAADAALKLDAYKRELPRRVRATRHTLSEQCQSDSAMLDFDTASELLYRVIE 360
           GEPVMSALDAADAALKLDAYKRELPRRVRATR TL+ QCQSDSAMLDFDTASELLYRVIE
Sbjct: 301 GEPVMSALDAADAALKLDAYKRELPRRVRATRSTLAGQCQSDSAMLDFDTASELLYRVIE 360

Query: 361 ELHAYTLTYASLTQRHHEREQWEHSYAPKTSMTTALIAGARAAIVMLALAAFWIVSGWPS 420
           ELHAYTLTYAS+TQRHHEREQWEHSYAPKTSMTTALIAGARAA+VML LA FWI SGWPS
Sbjct: 361 ELHAYTLTYASMTQRHHEREQWEHSYAPKTSMTTALIAGARAAVVMLCLAGFWIASGWPS 420

Query: 421 GDVAVLNAAAFCAITSAAPDPAKATRTVAIGVLFAAVAGYFYTFHILPRLDGYWMLASAL 480
           GDVAVLNAAAFCAITSAAPDPAKATRTVAIGVLFAAVAGY YTFHILPRLDGYWMLASAL
Sbjct: 421 GDVAVLNAAAFCAITSAAPDPAKATRTVAIGVLFAAVAGYVYTFHILPRLDGYWMLASAL 480

Query: 481 MPVLMLAVYLTTRPAYAGYGLGICIFFPFLAVPDNFAHFNAAGYLNESVALVVSLIVTAV 540
           MPVLMLAVYLTT+P +AGYGLGICIFFPFLAVPDNFAHFNAAGYLNESVALVVSL+VTAV
Sbjct: 481 MPVLMLAVYLTTKPKWAGYGLGICIFFPFLAVPDNFAHFNAAGYLNESVALVVSLLVTAV 540

Query: 541 AFMLLLPPTTDWTVRVLEKQLRKQVVDACFGKLAHLALKFESGTRDLMHQITMFTSSRPL 600
           AFM+LLPPTTDWTVRVLEKQLRKQVVDACFGKLAHLALKFESGTRDLMHQITMFT+SRPL
Sbjct: 541 AFMVLLPPTTDWTVRVLEKQLRKQVVDACFGKLAHLALKFESGTRDLMHQITMFTTSRPL 600

Query: 601 LRQKALGWMFATLEVGHAIIELRNELQGIRSEAPDLLPASAYAALNRLREAIPALFAQPS 660
           LRQKALGWMFATLEVGHAIIELRNEL GIR+EAPDLLPASAYAALNRLREAIPALFAQPS
Sbjct: 601 LRQKALGWMFATLEVGHAIIELRNELHGIRTEAPDLLPASAYAALNRLREAIPALFAQPS 660

Query: 661 AATLSAALAANDATIAEVQAAIGPHYRERSERHRLQRTLSYLHFIRTALLDEQSPLHTMR 720
           A TL++ALAANDATIAEVQ AIGPHYRERSERHRLQRTLSYLHFIRTALLDEQSPLHTMR
Sbjct: 661 ATTLASALAANDATIAEVQTAIGPHYRERSERHRLQRTLSYLHFIRTALLDEQSPLHTMR 720

Query: 721 AGGQNNTTGARHAT 734
           AG  NNTTG RHAT
Sbjct: 721 AGATNNTTGERHAT 734


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,062,859
Number of extensions: 79050
Number of successful extensions: 383
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 1
Length of query: 734
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 642
Effective length of database: 1,184,250
Effective search space: 760288500
Effective search space used: 760288500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 134 (56.2 bits)