BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0342.p (338 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311426|ref|YP_003775518.1| ATP-dependent Clp protease subu... 613 e-177 gi|300310731|ref|YP_003774823.1| ATP-dependent protease ATP-bind... 263 2e-71 gi|300310082|ref|YP_003774174.1| ClpA/B-type chaperone protein [... 199 3e-52 gi|300313318|ref|YP_003777410.1| ClpA/B-type chaperone ATPase [H... 191 1e-49 >gi|300311426|ref|YP_003775518.1| ATP-dependent Clp protease subunit [Herbaspirillum seropedicae SmR1] Length = 861 Score = 613 bits (1581), Expect = e-177, Method: Compositional matrix adjust. Identities = 297/303 (98%), Positives = 301/303 (99%) Query: 1 MMQGEREKLLHMEDVLHERVVGQDEAIVAVSDAIRRSRAGLGDPSKPYGSFMFLGPTGVG 60 MMQGEREKLLHMEDVLHERVVGQDEAIVAVSDAIRRSRAGLGDPSKPYGSFMFLGPTGVG Sbjct: 556 MMQGEREKLLHMEDVLHERVVGQDEAIVAVSDAIRRSRAGLGDPSKPYGSFMFLGPTGVG 615 Query: 61 KTELCKALASYLFDTEEAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKP 120 KTELCKALASYLFDTEEAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKP Sbjct: 616 KTELCKALASYLFDTEEAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKP 675 Query: 121 YSVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSHKIQSMED 180 YSVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSHKIQSMED Sbjct: 676 YSVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSHKIQSMED 735 Query: 181 SDPALVKLAVMAEVRTHFRPEFINRVDEIVVFHALDAKNIGAIAKIQLRILEQRLAKLEI 240 SDPALVKLAVMAEVRTHFRPEFINRVDEIVVFHALDAKNIGAIAKIQLRILEQRLAKLEI Sbjct: 736 SDPALVKLAVMAEVRTHFRPEFINRVDEIVVFHALDAKNIGAIAKIQLRILEQRLAKLEI 795 Query: 241 GLQISEAGLQKIAEAGFDPVYGARPLKRAIQQEIENPLSKQILAGKFGPKDVVHVEVQNG 300 GL+ISEAGLQKIAEAGFDPVYGARPLKRAIQQEIENPLSKQILAGKFGPKDVV V+V +G Sbjct: 796 GLEISEAGLQKIAEAGFDPVYGARPLKRAIQQEIENPLSKQILAGKFGPKDVVRVDVDHG 855 Query: 301 QLA 303 QL+ Sbjct: 856 QLS 858 >gi|300310731|ref|YP_003774823.1| ATP-dependent protease ATP-binding specificity subunit [Herbaspirillum seropedicae SmR1] Length = 767 Score = 263 bits (672), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 141/305 (46%), Positives = 198/305 (64%), Gaps = 18/305 (5%) Query: 3 QGEREKLLHMEDVLHERVVGQDEAIVAVSDAIRRSRAGLGDPSKPYGSFMFLGPTGVGKT 62 Q +R KL ++ L V GQD AI A+S AI+ +RAGLG KP GSF+F GPTGVGKT Sbjct: 446 QDDRAKLQTIDRDLKNVVFGQDPAIEALSSAIKMARAGLGKTDKPIGSFLFSGPTGVGKT 505 Query: 63 ELCKALASYLFDTEEAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYS 122 E+ K LA ++ E ++R DMSE+ME+H+V+RLIGAPPGYVG+++GG LTEAV +KP++ Sbjct: 506 EVAKQLA-FILGIE--LVRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVNKKPHA 562 Query: 123 VILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSHKIQ------ 176 V+LLDEIEKAHPD+FN+LLQV+D G +TD GR DF+N +I+MT+N G+ +Q Sbjct: 563 VLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKTDFRNVIIIMTTNAGAESLQKRTIGF 622 Query: 177 --SMEDSDPALVKLAVMAEVRTHFRPEFINRVDEIVVFHALDAKNIGAIAKIQLRILEQR 234 E D MA+++ F PEF NR+D I+ F LD + I + L LE++ Sbjct: 623 TEKKEAGDE-------MADIKRMFTPEFRNRLDAIISFRPLDEEIILRVVDKFLMQLEEQ 675 Query: 235 LAKLEIGLQISEAGLQKIAEAGFDPVYGARPLKRAIQQEIENPLSKQILAGKFGPKDVVH 294 L + ++ S++ + + + GFDP+ GARP+ R IQ I L+ ++L GK V Sbjct: 676 LHEKKVEAVFSDSLRKFLGKKGFDPLMGARPMSRLIQDLIRKALADELLFGKLVSGGRVT 735 Query: 295 VEVQN 299 VE+ + Sbjct: 736 VEMDD 740 >gi|300310082|ref|YP_003774174.1| ClpA/B-type chaperone protein [Herbaspirillum seropedicae SmR1] Length = 893 Score = 199 bits (506), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 122/313 (38%), Positives = 188/313 (60%), Gaps = 17/313 (5%) Query: 1 MMQGEREKLLHMEDVLHERVVGQDEAIVAVSDAIRRSRAGLGDPSKPYGSFMFLGPTGVG 60 M++ E + +L ++ +L ERV+GQ +A AV+ +R SRA L DP KP G F+F+GP+GVG Sbjct: 577 MVKDEIKTVLGLDALLKERVLGQPQATAAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVG 636 Query: 61 KTELCKALASYLFDTEEAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKP 120 KTE ALA L+ E +I I+MSE+ E H+V+ L G+PPGYVGY EGG LTEAVRR P Sbjct: 637 KTETALALADVLYGGERKLITINMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNP 696 Query: 121 YSVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSHKI----- 175 YSV+LLDE+EKAHPDV + QV D G M DG+GR +DFKNT+I++TSN+ S ++ Sbjct: 697 YSVVLLDEVEKAHPDVLELFFQVFDKGVMDDGEGREIDFKNTIIILTSNVASSQLMQACL 756 Query: 176 --QSMEDSDPALVKLAVMAEVRTHFRPEFINRVDEIVVFHALDAKNIGAIAKIQL----- 228 + E P + + + ++ F+P F+ R+ +++ ++ + + + I K++L Sbjct: 757 NKSAAELPTPDELDVLIRPQLVKAFKPAFLGRL-KVIPYYPISDEVLEQIIKLKLGRIAN 815 Query: 229 RILEQRLAKLEIGLQISEAGLQKIAEAGFDPVYGARPLKRAIQQEIENPLSKQILAGKFG 288 RI E A+ + EA L + E GAR + + + +++ +LA Sbjct: 816 RIAENHKAEFSYDKALVEAVLARCTEVD----SGARNVDNILNGSLLPEIAESVLARMAE 871 Query: 289 PKDVVHVEVQNGQ 301 + + ++V G+ Sbjct: 872 GQGISRIKVSAGK 884 >gi|300313318|ref|YP_003777410.1| ClpA/B-type chaperone ATPase [Herbaspirillum seropedicae SmR1] Length = 889 Score = 191 bits (484), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 109/244 (44%), Positives = 162/244 (66%), Gaps = 8/244 (3%) Query: 1 MMQGEREKLLHMEDVLHERVVGQDEAIVAVSDAIRRSRAGLGDPSKPYGSFMFLGPTGVG 60 M++ E + +L ++ +L ERV+GQ +A AV+ +R SRA L DP KP G F+F+GP+GVG Sbjct: 573 MVKDEIQTVLDLDALLQERVLGQPQATSAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVG 632 Query: 61 KTELCKALASYLFDTEEAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKP 120 KTE ALA L+ E +I I+MSE+ E H+V+ L G+PPGYVGY EGG LTEAVRR P Sbjct: 633 KTETALALADVLYGGERKLITINMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNP 692 Query: 121 YSVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSHKI----- 175 YSV+LLDE+EKAH DV + QV D G M D +GR +DFKNT+I++TSN+ S ++ Sbjct: 693 YSVVLLDEVEKAHADVLELFFQVFDKGVMDDAEGREIDFKNTIIILTSNVASAQMMQACL 752 Query: 176 -QSMED-SDPALVKLAVMAEVRTHFRPEFINRVDEIVVFHALDAKNIGAIAKIQLRILEQ 233 +S E+ P + + ++ F+P F+ R+ ++V ++ + + I K++L + + Sbjct: 753 NKSQEELPTPEELDTLIRPQLIKTFKPAFLGRL-KVVPYYPIADVVLVEIIKLKLARIAK 811 Query: 234 RLAK 237 R+A+ Sbjct: 812 RVAE 815 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 960,666 Number of extensions: 37608 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 171 Number of HSP's successfully gapped: 4 Length of query: 338 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 252 Effective length of database: 1,212,660 Effective search space: 305590320 Effective search space used: 305590320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)