BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0339.p
         (166 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311428|ref|YP_003775520.1| S-adenosylmethionine:2-demethyl...   304   3e-84
gi|300313736|ref|YP_003777828.1| demethylmenaquinone methyltrans...    66   1e-12
gi|300313743|ref|YP_003777835.1| 2-demethylmenaquinone methyltra...    56   1e-09

>gi|300311428|ref|YP_003775520.1|
           S-adenosylmethionine:2-demethylmenaquinone
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 163

 Score =  304 bits (778), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 150/162 (92%), Positives = 154/162 (95%)

Query: 5   SFATCDLCDANEDKLSAGTLHVLPPIFASFGRKQVFAGPARTLKVFEDNVQVRKALETPG 64
           +FATCDLCDA+EDKL+AGTLHVLPPIFASFGRKQ F GPARTLKVFEDNV VR  LETPG
Sbjct: 2   TFATCDLCDAHEDKLAAGTLHVLPPIFASFGRKQSFCGPARTLKVFEDNVLVRATLETPG 61

Query: 65  NGDVLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRALATHP 124
            G VLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRALATHP
Sbjct: 62  QGHVLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRALATHP 121

Query: 125 QRSFRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSRTRL 166
           QRSFRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSR+ L
Sbjct: 122 QRSFRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSRSAL 163


>gi|300313736|ref|YP_003777828.1| demethylmenaquinone
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score = 66.2 bits (160), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 40  FAGPARTLKVFE-DNVQVRKALETPGNGDVLVVDGGGSLRCALVGGNLAQLAQDNGWAGI 98
            AGPA T++V   DN+ +  A+     GDVLV+DG G   CAL+G  +    + +G AGI
Sbjct: 53  VAGPAVTVEVRPGDNLMIHAAMAIAKPGDVLVIDGKGDETCALMGEIMVSQCKASGLAGI 112

Query: 99  LVNGCVRDAAELNACEVGIRALATHPQRSFRKGAGDADIKVGIAGVAVYPGDWI 152
           ++ G VRD   +      + A+  +P    +  AG  +  + + G AV PGD I
Sbjct: 113 IIYGSVRDIEAIREIGFPVYAVGANPNGPTKNIAGRVNWPISVGGTAVQPGDLI 166


>gi|300313743|ref|YP_003777835.1| 2-demethylmenaquinone
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score = 56.2 bits (134), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 1/123 (0%)

Query: 40  FAGPARTLKVFE-DNVQVRKALETPGNGDVLVVDGGGSLRCALVGGNLAQLAQDNGWAGI 98
            AGPA T+     DN+ +  A+     GDVLVVD    +     G  L  LA   G AG+
Sbjct: 41  LAGPALTVDARPGDNLVLHYAVLQAKPGDVLVVDAKAFMEAGPWGDVLTVLAMKKGIAGL 100

Query: 99  LVNGCVRDAAELNACEVGIRALATHPQRSFRKGAGDADIKVGIAGVAVYPGDWIYADVDG 158
           +VNGCVRDA  +      +       + + +   G  ++ + I  V ++PGD I  D DG
Sbjct: 101 VVNGCVRDANTIIDLGFPVFCRGLSIKGTGKHQPGKVNVPIVIGDVLIHPGDIIVGDRDG 160

Query: 159 VLV 161
           + V
Sbjct: 161 LAV 163


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 482,477
Number of extensions: 17404
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 88
Effective length of database: 1,250,540
Effective search space: 110047520
Effective search space used: 110047520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)