BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0338.p
         (743 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311429|ref|YP_003775521.1| transmembrane protein [Herbaspi...  1413   0.0  

>gi|300311429|ref|YP_003775521.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 743

 Score = 1413 bits (3658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 698/743 (93%), Positives = 723/743 (97%)

Query: 1   MHYALDIRTFLFSHYFYTGVRIAIGVVGLTLLVFNVADMPTTMTVFLGALCTSLMDLPSP 60
           MHYALDIRTFLFSHYFYTGVRIAIGVVGLTLLVFNVADMPTTMTVFLGALCTSLMDLPSP
Sbjct: 1   MHYALDIRTFLFSHYFYTGVRIAIGVVGLTLLVFNVADMPTTMTVFLGALCTSLMDLPSP 60

Query: 61  LRHKFNEMLAGVLLCTVVMLVISLCAPVPWLVSAMMVVVSFFASMMVVYGKKTMPLQFAA 120
           LRHKFNEMLAGVLLCTVVML+ISLCAP+PWLVSAMMVVVSFFASMMVVYGKKTMPLQFAA
Sbjct: 61  LRHKFNEMLAGVLLCTVVMLLISLCAPIPWLVSAMMVVVSFFASMMVVYGKKTMPLQFAA 120

Query: 121 LMVMTLSMENQVPIADAFLHAGLFLGGGLGYLAYSMVVSWFLRRRIKQQVLAEALFELAR 180
           LMVMTLSMENQVPIADAFLHA LFLGGGLGYLAYSM VSWFLRRRIKQQVLAEALFELAR
Sbjct: 121 LMVMTLSMENQVPIADAFLHAALFLGGGLGYLAYSMAVSWFLRRRIKQQVLAEALFELAR 180

Query: 181 YLRIKADFYDVKHDLASQFNQLVRQQIVVADKQQASRDLILRDLHTKQDGLLVQVHLSML 240
           YLRIKA+FYDV+HDLA QFNQLVRQQIVVADKQQASRDLILRDL+TKQDGLLVQVHLSML
Sbjct: 181 YLRIKAEFYDVRHDLAGQFNQLVRQQIVVADKQQASRDLILRDLYTKQDGLLVQVHLSML 240

Query: 241 ELYEQVLSTHADYALLRQHFGESDVMIFLRDLATKAAQDIESIAYAITRKKASEPSVNYK 300
           ELYEQVLSTHADYA LRQHFG++DVM+FLRDLA KAAQDIESIAYAITR KASEP+VNYK
Sbjct: 241 ELYEQVLSTHADYAFLRQHFGDADVMVFLRDLANKAAQDIESIAYAITRNKASEPTVNYK 300

Query: 301 AELRAVQFEMQELAQPGPRQASQEALTLLRVTYNKIRDIIEFIGQVHQATQNPVDPLPIL 360
           AELRAVQFEM ELAQPGPRQAS+EALT+LRVTYNKIRDIIE I QVHQATQNPVDP+PIL
Sbjct: 301 AELRAVQFEMHELAQPGPRQASEEALTILRVTYNKIRDIIELISQVHQATQNPVDPIPIL 360

Query: 361 PGSDMTPFLTQQKFKFNMLLVNLRWQSPIFRFAIRVALAVTTGLWIAGLLPYMAHGYWIV 420
           PGSDMTPFLTQQKFKFNMLLVNLRWQSPIFRFAIRVALAVTTGLWIA  LPYM+HGYWIV
Sbjct: 361 PGSDMTPFLTQQKFKFNMLLVNLRWQSPIFRFAIRVALAVTTGLWIANQLPYMSHGYWIV 420

Query: 421 LTIVIILKPNFSATKQRMADRLIGTVIGCLITMLILRFVHNPLGQLAVLFAASVAAPAFT 480
           LTIVIILKPNFSATKQRMADRLIGTVIGCLITMLILRFVHNPLGQLAVLFAASVAAPAFT
Sbjct: 421 LTIVIILKPNFSATKQRMADRLIGTVIGCLITMLILRFVHNPLGQLAVLFAASVAAPAFT 480

Query: 481 YIKYRYTAIAASVQILMLLNLLVPAGHQGVIGERLIDTLIGVVIATVFSYVLPAWEYRDL 540
           YIKYRYTAIAASVQILMLLNLLVPAGHQGVIGERLIDT+IGVVIATVFSYVLPAWEYRDL
Sbjct: 481 YIKYRYTAIAASVQILMLLNLLVPAGHQGVIGERLIDTIIGVVIATVFSYVLPAWEYRDL 540

Query: 541 PKLLRNVLKSSQRYLTASRDLLEGKVKDDFFYRVCRKGFMDSLAALISALVRMMDEPATK 600
           PKLLRNVLKSSQRYLTASRD+LEGKV+DDFFYRVCRKGFMDSLAALISALVRMMDEPATK
Sbjct: 541 PKLLRNVLKSSQRYLTASRDMLEGKVQDDFFYRVCRKGFMDSLAALISALVRMMDEPATK 600

Query: 601 QRAVRELNRFIVQNYLVAAHIAALRLMLRRHQENMPQSAVARLIEETYLEASQHLAEAQR 660
           QRAVRELNRFIVQNYLVAAHIAALRLMLRRHQEN+PQ+ V+RLIEETYLEASQHLAEAQR
Sbjct: 601 QRAVRELNRFIVQNYLVAAHIAALRLMLRRHQENLPQAQVSRLIEETYLEASQHLAEAQR 660

Query: 661 LLAPKPRKRGGAVVVSPEAAEDKALSGKIELIGPVTPEPVPAEASAWSGWDNLRRRTSLL 720
           LLAP+PRKRGGAV VSP+A +DKALSGKIELIGP+ PEPVPAEASAWSGWDNLRRRTSLL
Sbjct: 661 LLAPQPRKRGGAVTVSPQAPQDKALSGKIELIGPLPPEPVPAEASAWSGWDNLRRRTSLL 720

Query: 721 NQDLKEIVSQTEAIDRVLRKTPD 743
           NQDLKEIV QT AID++LR   D
Sbjct: 721 NQDLKEIVVQTAAIDQILRTRKD 743


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,998,630
Number of extensions: 76490
Number of successful extensions: 344
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 1
Length of query: 743
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 651
Effective length of database: 1,184,250
Effective search space: 770946750
Effective search space used: 770946750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 134 (56.2 bits)