BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0335.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311430|ref|YP_003775522.1| isocitrate lyase [Herbaspirillu...   569   e-163
gi|300312420|ref|YP_003776512.1| carboxyphosphonoenolpyruvate ph...    62   5e-11

>gi|300311430|ref|YP_003775522.1| isocitrate lyase [Herbaspirillum
           seropedicae SmR1]
          Length = 434

 Score =  569 bits (1466), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 275/277 (99%), Positives = 276/277 (99%)

Query: 1   VLNAFELMKSMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTREACEKLNAARLAADVMG 60
           VLNAFELMKSMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTREA EKLNAARLAADVMG
Sbjct: 158 VLNAFELMKSMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTREAVEKLNAARLAADVMG 217

Query: 61  TKTLVIARTDAEAADLLTSDVDANDKPFLSGERTVEGFFKTHPGIDQAISRGLAYAEYAD 120
           TKTLVIARTDAEAADLLTSDVDANDKPFLSGERTVEGFFKTHPGIDQAISRGLAYAEYAD
Sbjct: 218 TKTLVIARTDAEAADLLTSDVDANDKPFLSGERTVEGFFKTHPGIDQAISRGLAYAEYAD 277

Query: 121 MVWCETGKPDLAFAKTFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMG 180
           MVWCETGKPDLAFAKTFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMG
Sbjct: 278 MVWCETGKPDLAFAKTFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMG 337

Query: 181 YKFQFITLAGFHALNYSMFNLAHGYARNQMSAFVELQEAEFAAASKGFTAVKHQREVGTG 240
           YKFQFITLAGFHALNYSMFNLAHGYARNQMSAFVELQEAEFAAA+KGFTAVKHQREVGTG
Sbjct: 338 YKFQFITLAGFHALNYSMFNLAHGYARNQMSAFVELQEAEFAAATKGFTAVKHQREVGTG 397

Query: 241 YFDAVTQAIQQGQSSTTALHGSTEDEQFFDDKAKKAA 277
           YFDAVTQAIQQGQSSTTALHGSTEDEQFFDDKAKKAA
Sbjct: 398 YFDAVTQAIQQGQSSTTALHGSTEDEQFFDDKAKKAA 434


>gi|300312420|ref|YP_003776512.1| carboxyphosphonoenolpyruvate
           phosphonomutase [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score = 62.0 bits (149), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 84/208 (40%), Gaps = 48/208 (23%)

Query: 3   NAFELMKSMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTREACEKLNAARLAADVMGTK 62
           N    +KSMI+ GAA +H EDQ+ + K+CGH   K +V  +E  +++ AA    D    +
Sbjct: 96  NVARTVKSMIKFGAAAMHIEDQVGA-KRCGHRPNKEIVSKQEMVDRIKAA---VDARTDE 151

Query: 63  TLVI-ARTDAEAADLLTSDVDANDKPFLSGERTVEGFFKTHPGIDQAISRGLAYAEY-AD 120
             VI ARTDA A +                            G+D AI R +A  E  AD
Sbjct: 152 NFVIMARTDALAVE----------------------------GLDAAIERAVACVEAGAD 183

Query: 121 MVWCETGKPDLAFAKTFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMG 180
           M++ E    DLA  K FA A+       +  +  +P F                EL    
Sbjct: 184 MIFPE-AITDLAMYKQFANAVKVPILANITEFGSTPLFTVD-------------ELKGAD 229

Query: 181 YKFQFITLAGFHALNYSMFNLAHGYARN 208
                  L+ F A+N +  N+     R+
Sbjct: 230 VGLVLYPLSAFRAMNKAAENVYQAIRRD 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 832,285
Number of extensions: 33670
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)