BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0334.p (222 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311431|ref|YP_003775523.1| sulfate/molybdate ABC transport... 373 e-105 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 152 3e-38 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 149 2e-37 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 144 4e-36 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 144 7e-36 >gi|300311431|ref|YP_003775523.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 222 Score = 373 bits (958), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/221 (83%), Positives = 207/221 (93%) Query: 1 VSVDLHLQKELRAADRVFSLDITLASDSQRIVLYGPSGSGKSLTLKAIAGLMRPDSGHIR 60 +S+DL +QK+L A+DR F+LD++L S SQRIVLYGPSG+GKSLTLKAIAGLMRPDSG IR Sbjct: 1 MSLDLQIQKQLHASDRRFALDLSLVSASQRIVLYGPSGAGKSLTLKAIAGLMRPDSGRIR 60 Query: 61 IQGRTLFDSAQGIDVRVQERNVAYLFQDYALFPHLTVAQNIAFGLARGSINLRRPAEHPA 120 + GRTLF+S +GID+ VQ RNVAYLFQDYALFPHL+VAQNIAFGLARG NLRRPA+HPA Sbjct: 61 LNGRTLFNSNEGIDLPVQGRNVAYLFQDYALFPHLSVAQNIAFGLARGCFNLRRPAQHPA 120 Query: 121 VRQWLQAFELDAIAHSRPAQISGGQRQRVALARALVAEPDMLLLDEPFSALDLSLRQRMR 180 V +WL+AFELD IAHSRPAQISGGQRQRVALARALVAEPD+LLLDEPFSALDLSLR+RMR Sbjct: 121 VAKWLRAFELDDIAHSRPAQISGGQRQRVALARALVAEPDILLLDEPFSALDLSLRERMR 180 Query: 181 SELAELQSRLQVPMLLITHDPADVEALGQTVFELRDGRLHR 221 +ELAELQ++LQVPMLLITHDPADVEALGQTVFELRDGRLH+ Sbjct: 181 AELAELQAQLQVPMLLITHDPADVEALGQTVFELRDGRLHQ 221 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 152 bits (383), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/194 (43%), Positives = 120/194 (61%), Gaps = 8/194 (4%) Query: 31 IVLYGPSGSGKSLTLKAIAGLMRPDSGHIRIQGRTLFDSAQGIDVRVQERNVAYLFQDYA 90 + L GPSGSGK+ L+A+AGL P +G I I R +FD A+ ++ +ERN+ +FQ YA Sbjct: 36 VALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVFDGARNFEMPAEERNLGLVFQSYA 95 Query: 91 LFPHLTVAQNIAFGLARGSINLRR-PAEHPA--VRQWLQAFELDAIAHSRPAQISGGQRQ 147 L+PH TVA N+A+GL LR+ P+ A V+ L L + P Q+SGGQ+Q Sbjct: 96 LWPHKTVADNVAYGL-----KLRKTPSGEIATRVKAVLSQLGLGHLGERYPHQLSGGQQQ 150 Query: 148 RVALARALVAEPDMLLLDEPFSALDLSLRQRMRSELAELQSRLQVPMLLITHDPADVEAL 207 RVA+ARALV P ++LLDEP S LD LR+ R+ L EL RL + L++THD + A+ Sbjct: 151 RVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALMVTHDQGEAMAI 210 Query: 208 GQTVFELRDGRLHR 221 + L +GR+ + Sbjct: 211 SDRILLLNNGRIEQ 224 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 149 bits (376), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 82/192 (42%), Positives = 118/192 (61%), Gaps = 7/192 (3%) Query: 28 SQRIVLYGPSGSGKSLTLKAIAGLMRPDSGHIRIQGRTLFDSAQGIDVRVQERNVAYLFQ 87 + +VL GPSG GK+ TL+ IAGL PD G GR LF + +++R V +FQ Sbjct: 36 GETLVLLGPSGCGKTTTLRMIAGLEFPDEG-----GRVLFGEEDVTMLPIEKRGVGMVFQ 90 Query: 88 DYALFPHLTVAQNIAFGLARGSINLRRPAEHPAVRQWLQAFELDAIAHSRPAQISGGQRQ 147 +YALFP+++V +NIA+G+ I AE V + L+ L ++H R Q+SGGQ+Q Sbjct: 91 NYALFPNMSVGENIAYGMKIRKIAAGERAER--VERLLEMVHLQGLSHRRVDQLSGGQKQ 148 Query: 148 RVALARALVAEPDMLLLDEPFSALDLSLRQRMRSELAELQSRLQVPMLLITHDPADVEAL 207 RVALARAL EP +LLLDEP +ALD LR+ +RS+L +L L + + +THD + AL Sbjct: 149 RVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGITAIYVTHDQGEAMAL 208 Query: 208 GQTVFELRDGRL 219 G + + G++ Sbjct: 209 GDRIVVMERGKI 220 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 144 bits (364), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/217 (40%), Positives = 122/217 (56%), Gaps = 11/217 (5%) Query: 6 HLQKELRAADRVFSLDITLASDSQRIVLYGPSGSGKSLTLKAIAGLMRPDSGHIRIQGRT 65 H+QK + + + + + + L GPSG GK+ L+ IAGL PDSG + Sbjct: 7 HIQKRFGSFTALNDVSLNFPA-GELTALLGPSGCGKTTLLRIIAGLESPDSGQV------ 59 Query: 66 LFDSAQGIDVRVQERNVAYLFQDYALFPHLTVAQNIAFGLARGSINLRRPAE---HPAVR 122 L D V+ER V ++FQ YALF H+TV +NIAFGL R +RP+E V+ Sbjct: 60 LLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGL-RVKPRSQRPSEAVIREKVK 118 Query: 123 QWLQAFELDAIAHSRPAQISGGQRQRVALARALVAEPDMLLLDEPFSALDLSLRQRMRSE 182 + L+ +LD +A P Q+SGGQRQR+ALARAL EP +LLLDEPF ALD +R+ +R Sbjct: 119 RLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRW 178 Query: 183 LAELQSRLQVPMLLITHDPADVEALGQTVFELRDGRL 219 L L L V + +THD + + V + G++ Sbjct: 179 LRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQV 215 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 144 bits (362), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 84/211 (39%), Positives = 123/211 (58%), Gaps = 19/211 (9%) Query: 12 RAADRVFSLDITLASDSQRIVLYGPSGSGKSLTLKAIAGLMRPDSGHIRIQGRTLFDSAQ 71 +A D + +D +A D + IV+ GPSG GKS L+ +AGL SG I I R + D Sbjct: 18 KAVDVIHGIDAEIA-DGEFIVMVGPSGCGKSTLLRMVAGLEEISSGQIVIGDRVVND--- 73 Query: 72 GIDVRVQERNVAYLFQDYALFPHLTVAQNIAFGL-----ARGSINLRRPAEHPAVRQWLQ 126 + +ER++A +FQ+YAL+PH+TV QN+A+GL ++ I+ R V++ Sbjct: 74 ---LEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDAR-------VQRAAA 123 Query: 127 AFELDAIAHSRPAQISGGQRQRVALARALVAEPDMLLLDEPFSALDLSLRQRMRSELAEL 186 EL A+ P Q+SGGQRQRVA+ RA+V +P + L DEP S LD LR +MR E+ +L Sbjct: 124 ILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEIQKL 183 Query: 187 QSRLQVPMLLITHDPADVEALGQTVFELRDG 217 + L+ L +THD + LGQ + + G Sbjct: 184 HASLRTTSLYVTHDQVEAMTLGQRMIVMNRG 214 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 641,393 Number of extensions: 23920 Number of successful extensions: 458 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 290 Number of HSP's successfully gapped: 136 Length of query: 222 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 140 Effective length of database: 1,231,600 Effective search space: 172424000 Effective search space used: 172424000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)