BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0332.p
         (256 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311433|ref|YP_003775525.1| molybdate ABC transporter perip...   421   e-119
gi|300312151|ref|YP_003776243.1| molybdate ABC transporter perip...    70   1e-13

>gi|300311433|ref|YP_003775525.1| molybdate ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  421 bits (1082), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/256 (82%), Positives = 232/256 (90%)

Query: 1   MLKTARLKAALGAACAATLLLATTSAQATDLVVSAAASLTNAFKELAQSFEQQHPGVKVI 60
           M   +RL  ALGAACAATL+LA  +AQA DLVVSAAASLTNAFKELAQSFEQQHPGVKV+
Sbjct: 1   MSTRSRLNTALGAACAATLMLAAGAAQAADLVVSAAASLTNAFKELAQSFEQQHPGVKVV 60

Query: 61  TNFGASDILMQQIVRGAPADVFASADQTAMDKAAAEKAVDSSTRKNFAANQIVVIVPHDA 120
           +NFGASDILM+QIVRGAPADVFASADQTAMDKA AEKAVD +TRKNFAANQIV+IV   +
Sbjct: 61  SNFGASDILMRQIVRGAPADVFASADQTAMDKAVAEKAVDPATRKNFAANQIVLIVTQGS 120

Query: 121 RVQPATLADLTGAGYQRIALGNPASVPFGRYTKAALEQAGLWAQVQAKGVMAENVRTSLD 180
           R+ P +LADLT   Y+RIALGNPASVPFGRYT+ ALEQAGLW+QVQAKGVMAENVRTSLD
Sbjct: 121 RLAPTSLADLTQPDYKRIALGNPASVPFGRYTRTALEQAGLWSQVQAKGVMAENVRTSLD 180

Query: 181 YVARGEVDAGFVFATDAAVMPDKVKVALRIPSTTPATYPIAVTAGTRQPALAAQFVAHVL 240
           YVARGE DAGFVFATDAA+MP+KVKVALR+PS  PATYPIAVTAG+RQPALAAQFVA+VL
Sbjct: 181 YVARGEADAGFVFATDAAIMPEKVKVALRLPSDQPATYPIAVTAGSRQPALAAQFVAYVL 240

Query: 241 SASGQAVLARYGFQKP 256
           S +GQAVLARYGF KP
Sbjct: 241 SPTGQAVLARYGFLKP 256


>gi|300312151|ref|YP_003776243.1| molybdate ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score = 70.5 bits (171), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 9/192 (4%)

Query: 1   MLKTARLKAALGAACAATLLLATTSAQATDLVVSAAASLTNAFKELAQSFEQQHPGVKVI 60
           ML+T  L      AC    LL      A ++ V+ AA+ T  FK++A +FEQ   G KV+
Sbjct: 1   MLRTLML------ACTWLWLLMPV-VHAEEVHVAVAANFTQPFKQIAAAFEQA-TGHKVV 52

Query: 61  TNFGASDILMQQIVRGAPADVFASADQTAMDKAAAEKAVDSSTRKNFAANQIVVIVPHDA 120
             FG++     QI  GAP ++  +AD         +K   + TR  +A  ++V+      
Sbjct: 53  AAFGSTGQFYAQINNGAPFEILLAADADTPALLEKQKTAVAGTRFTYARGKLVLWSAKPG 112

Query: 121 RVQPATLADLTGAGYQRIALGNPASVPFGRYTKAALEQAGLWAQVQAKGVMAENVRTSLD 180
            V  A    L    ++ ++L NP   P+G      +++ GL   ++ K V AENV  +  
Sbjct: 113 VVD-AQGEILKKGAFEHLSLANPKLAPYGLAGVQTMQKLGLEEALRPKIVQAENVNQAYQ 171

Query: 181 YVARGEVDAGFV 192
           ++A G    GFV
Sbjct: 172 FIASGNALLGFV 183


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.127    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 686,256
Number of extensions: 28269
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 2
Length of query: 256
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,226,865
Effective search space: 212247645
Effective search space used: 212247645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)