BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0329.p
         (295 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311436|ref|YP_003775528.1| external-DNA catabolic protein ...   565   e-162

>gi|300311436|ref|YP_003775528.1| external-DNA catabolic protein
           [Herbaspirillum seropedicae SmR1]
          Length = 295

 Score =  565 bits (1457), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 270/295 (91%), Positives = 283/295 (95%)

Query: 1   MLSYRHAFHAGNHADVLKHMVIIQLMRYLGQKDPAYMVIDTHAGAGVYALDGDYASKNAE 60
           MLSYRHAFHAGNHADVLKHMVIIQLMRYLGQKD AYMVIDTHAGAGVYALDGDYASKNAE
Sbjct: 1   MLSYRHAFHAGNHADVLKHMVIIQLMRYLGQKDTAYMVIDTHAGAGVYALDGDYASKNAE 60

Query: 61  YETGIAKLWDRKDLPAMVKEYVDLVRSLNPSGKMRYYPGSPYCAEKTMREQDRLRLFEMH 120
           Y+TGIAKLWDRKDLP  +KEYVDLVRSLNPSGKMRYYPGSPYCAEK MREQDRLRLFE+H
Sbjct: 61  YDTGIAKLWDRKDLPPALKEYVDLVRSLNPSGKMRYYPGSPYCAEKVMREQDRLRLFELH 120

Query: 121 PSEVKVLEDNFRKLEAHAAAQGQRPASRGKRVMVYRGDGFQGLKALLPPPSRRGLVLIDP 180
           P+EVKVLE+NFRKLEAHAAAQGQRPA+RGKRVMV+RGDGFQGLKALLPPPSRR LVLIDP
Sbjct: 121 PTEVKVLEENFRKLEAHAAAQGQRPAARGKRVMVHRGDGFQGLKALLPPPSRRALVLIDP 180

Query: 181 PYEDKRDYTHVAQVLADALTRFPTGTYAVWYPVLHRNESRQLPERLKRLGAKSWLNVTLA 240
           PYEDKRDYTHVAQVLADALTRFPTG YAVWYP L RNESRQLPERLKRLGAKSWLNV+LA
Sbjct: 181 PYEDKRDYTHVAQVLADALTRFPTGMYAVWYPALQRNESRQLPERLKRLGAKSWLNVSLA 240

Query: 241 IHGPAPDGFGLHNSGMFILNPPWTLEAQLKEVMPYLIEVLGEDDSAEYVLESGEN 295
           IHGPAPDGFGLHNSGMFILNPPWTLE  L+E+MPYL++VLG DDSAE+VLESGE 
Sbjct: 241 IHGPAPDGFGLHNSGMFILNPPWTLEPMLRELMPYLVDVLGVDDSAEFVLESGET 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,016,825
Number of extensions: 44700
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,217,395
Effective search space: 255652950
Effective search space used: 255652950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)