BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0328.p
         (453 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311437|ref|YP_003775529.1| signal transduction containing ...   820   0.0  
gi|300311452|ref|YP_003775544.1| signal transduction containing ...   103   2e-23

>gi|300311437|ref|YP_003775529.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/430 (93%), Positives = 414/430 (96%)

Query: 16  HQALDFFLARQPILSREQDLIGYELLFRSAAFGPANVKDDVTATAAVIAHASELGLSNVI 75
           HQALDF+LARQPILSREQ LIGYELLFRSAAFGPANVKDDVTATAAVIAHASELGLSNVI
Sbjct: 13  HQALDFYLARQPILSREQHLIGYELLFRSAAFGPANVKDDVTATAAVIAHASELGLSNVI 72

Query: 76  GNLHGFINVDAAVLMSDFIYFLPADKVVLEILETVRVTPELVTRVRELVAAGYVFALDDV 135
           GNL GFINVDAAVLMSDFIYFLP DKVVLEILETVRVTPELV RVRELV AGYVFALDDV
Sbjct: 73  GNLQGFINVDAAVLMSDFIYFLPNDKVVLEILETVRVTPELVVRVRELVKAGYVFALDDV 132

Query: 136 VAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAEKVESLQVFNDCMTF 195
           VAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAEKVE+LQ FNDC+TF
Sbjct: 133 VAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAEKVETLQQFNDCVTF 192

Query: 196 GFDYFQGYYFAKPMILQGKKLEASKMIIMHLLTLLVRNVDNAEIVRYIKRDVALSLTLLR 255
           GFDYFQGYYFAKPMILQGKKLEASKM+IMHLLTLLVRNVDN EIVR+IKRDVALSLTLLR
Sbjct: 193 GFDYFQGYYFAKPMILQGKKLEASKMVIMHLLTLLVRNVDNGEIVRFIKRDVALSLTLLR 252

Query: 256 LVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDKDRAHSMSPLMILAATRGK 315
           LVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDK++AH+MSPLMILAATRGK
Sbjct: 253 LVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDKEQAHTMSPLMILAATRGK 312

Query: 316 MLELITAKIRPGRRKMSEMAFTVGIMSLVDALFGMSMETVLRQITVSTEIREALLRRTGF 375
           MLELIT +IRPGRRKMSEMAFTVGIMSLVDALFGMSMETVLRQITVSTEIREALLRRTGF
Sbjct: 313 MLELITTRIRPGRRKMSEMAFTVGIMSLVDALFGMSMETVLRQITVSTEIREALLRRTGF 372

Query: 376 YGTVLRLVECTELREPDQAEMQRLLEELQLSSDDFFAAEKQAFEWGNSIANNNIGQQASM 435
           YG  LRLVECTE R+ DQAEMQRLL+ELQLS+DDFF AEK AFEWGNSI+NNNIG QASM
Sbjct: 373 YGVALRLVECTEQRDQDQAEMQRLLDELQLSADDFFEAEKHAFEWGNSISNNNIGAQASM 432

Query: 436 QMSPPPEGYI 445
            MSPPPEG+I
Sbjct: 433 HMSPPPEGFI 442


>gi|300311452|ref|YP_003775544.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 399

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 177/366 (48%), Gaps = 22/366 (6%)

Query: 67  SELGLSNVIGNLHGFINV-DAAVLMSDFIYFLPADKVVLEILETVRVTPELVTRVRELVA 125
           +E  L + +G L+  I V D A    +F    P  ++ L +     V P  +  +  L +
Sbjct: 48  NEFELHDALGGLNCIIPVSDPASFAPEFREQFPQGQLALRVPVEHCVDPARIDALDWLYS 107

Query: 126 AGYVFALDDVVAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAEKVES 185
            G+    D + A+   +    P V+ I   V++    KL + +      +   LAE V  
Sbjct: 108 RGFSILADGLPAQGASV---FPFVESI---VLDASIGKLPETAQWLHGLRGPHLAENVAD 161

Query: 186 LQVFNDCMTFGFDYFQGYYFAKPMILQGKKLEASKMIIMHLLTLLVRNVDNAEIVRYIKR 245
              F+ C   GF +F G Y   P     +K   S+  ++ LL L+ R+ D  E+   +K+
Sbjct: 162 AVQFDACRVQGFRWFSGDYALHPDSRLSQKNSISRARLLKLLELVARDADANELESLLKQ 221

Query: 246 DVALSLTLLRLVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDKDRAHSMSP 305
           D ALS  L +LV++  +GF   I +  QA+ +LGRRQL+RWLQ+LL+A    D   S +P
Sbjct: 222 DPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLLYARFPGDE--SANP 279

Query: 306 LMILAATRGKMLELITAKIRPGRRKMSEMAFTVGIMSLVDALFGMSMETVLRQITVSTEI 365
           L+  AA R  M+E +   I   + ++ + AF  G+ SL+D L GM +  ++  + +  +I
Sbjct: 280 LLPRAAARAAMMEAMAQCIDCTQEEL-DRAFITGMFSLLDILLGMPLNDIIEPLKLPVDI 338

Query: 366 REALLRRTGFYGTVLRLVECTE-----LREPDQAEMQRLLEELQLSSDDFFAAEKQAFEW 420
             AL+RR+G  G +L +VE +E     LR  D       L+   L ++ +     QAF W
Sbjct: 339 VNALVRRSGRLGKLLDVVERSEDGRIPLRHSD-------LDAAGLDAEVYCRCLIQAFNW 391

Query: 421 GNSIAN 426
              ++ 
Sbjct: 392 ATRVST 397


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,221,510
Number of extensions: 45539
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 453
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 365
Effective length of database: 1,203,190
Effective search space: 439164350
Effective search space used: 439164350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)