BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0322.p (322 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311443|ref|YP_003775535.1| LysR family transcription regul... 612 e-176 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 192 4e-50 gi|300311424|ref|YP_003775516.1| LysR family transcription regul... 171 7e-44 gi|300313769|ref|YP_003777861.1| transcription regulator protein... 170 1e-43 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 164 6e-42 >gi|300311443|ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 612 bits (1579), Expect = e-176, Method: Compositional matrix adjust. Identities = 291/314 (92%), Positives = 307/314 (97%) Query: 1 MLDLNDIWLFVHVVRAGSFAAAGRKLSMPPNTISRRLQALEAAMGVRLLQRSTRQLNMTA 60 MLDLNDIWLFVHVVRAGSFAAAGR+LSMPPNTISRRLQ+LEAAMGVRLLQRSTRQLNMTA Sbjct: 1 MLDLNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTA 60 Query: 61 AGREFFERCAPGLEDIEHASASLTQSQGEPSGSLRVAAPVDFFDNFSIEWMHEFMHLYPK 120 AGREFFERCAPGLEDIEHASASLT+SQGEP+GSLRVAAPVDFFDNFSIEWMHEFMHLYPK Sbjct: 61 AGREFFERCAPGLEDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMHLYPK 120 Query: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHMALIASPRYLERAGTPQA 180 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSH+ALIASPRYLER GTPQ+ Sbjct: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLERQGTPQS 180 Query: 181 LADLVGHACLATSQAPQHTVWKLEGPHGPENVRVVPRLCINTAQGQLRAARAGLGIALLP 240 L DL HACLATSQAPQHTVWKLEGPHGPE+V+V PRLC+NTAQGQLRAARAGLGIALLP Sbjct: 181 LTDLTAHACLATSQAPQHTVWKLEGPHGPESVKVTPRLCVNTAQGQLRAARAGLGIALLP 240 Query: 241 TMLASEDLRNGSLINILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLERGIADKG 300 TMLASEDLRNG+L+NILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLERGIADKG Sbjct: 241 TMLASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLERGIADKG 300 Query: 301 AQACQEHLKREAAV 314 AQAC++HL+ E+ + Sbjct: 301 AQACEKHLEGESGL 314 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 192 bits (487), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 106/290 (36%), Positives = 159/290 (54%) Query: 1 MLDLNDIWLFVHVVRAGSFAAAGRKLSMPPNTISRRLQALEAAMGVRLLQRSTRQLNMTA 60 M L +I F+ V GSF A L + +SR + LEA +G RL+QR+TR+L++T Sbjct: 1 MNKLREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 Query: 61 AGREFFERCAPGLEDIEHASASLTQSQGEPSGSLRVAAPVDFFDNFSIEWMHEFMHLYPK 120 AG + ERC + +E A L+ +P+G LR+ AP+ F F+ +P+ Sbjct: 61 AGALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPE 120 Query: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHMALIASPRYLERAGTPQA 180 + L+ L+D D+I EG D+A R L DS+LV RKL + + + ASP YL+ GTP Sbjct: 121 ISLDITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAH 180 Query: 181 LADLVGHACLATSQAPQHTVWKLEGPHGPENVRVVPRLCINTAQGQLRAARAGLGIALLP 240 +L H ++ S W+ GP GP +VRV RL +N ++AA G+GI P Sbjct: 181 PHELAQHQTISYSYNQSKDEWQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQP 240 Query: 241 TMLASEDLRNGSLINILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFAD 290 T + + LR+G L++IL DY +G YAVY R LP+ + A+++F + Sbjct: 241 TFMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTE 290 >gi|300311424|ref|YP_003775516.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 171 bits (433), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 3/301 (0%) Query: 1 MLD-LNDIWLFVHVVRAGSFAAAGRKLSMPPNTISRRLQALEAAMGVRLLQRSTRQLNMT 59 M+D L ++ +F VV AGSF A +++ + +SR + LE + RL+ R+TR++ +T Sbjct: 1 MMDTLQNMRVFARVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALT 60 Query: 60 AAGREFFERCAPGLEDIEHASASLTQSQGEPSGSLRVAAPVDFFDNFSIEWMHEFMHLYP 119 AG + RC + ++ A A + + +PSG LR+ A F + I + + YP Sbjct: 61 EAGERYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYP 120 Query: 120 KVQLEFVLNDGRADLIAEGIDLAF-RGGVLPDSSLVARKLVQSHMALIASPRYLERAGTP 178 V +E L D++ EG D++ LPDS L+ R+L + L ASP YL++ G P Sbjct: 121 DVAVELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGSTFSMLCASPAYLDKYGAP 180 Query: 179 QALADLVGHACLA-TSQAPQHTVWKLEGPHGPENVRVVPRLCINTAQGQLRAARAGLGIA 237 Q ADL+ HACL S W LEGP G V V +N A+ L A R G+GI Sbjct: 181 QQPADLLNHACLQLVSPISPLDEWILEGPEGGTVVAVKSNFQVNVAEAMLTAIREGMGIG 240 Query: 238 LLPTMLASEDLRNGSLINILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLERGIA 297 +LP A + LR G+++ +LP ++ MG YA+Y R+ L + +S +++ + ++R + Sbjct: 241 VLPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWMHETVDRTLQ 300 Query: 298 D 298 + Sbjct: 301 E 301 >gi|300313769|ref|YP_003777861.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 170 bits (430), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 158/300 (52%), Gaps = 5/300 (1%) Query: 1 MLDLNDIWLFVHVVRAGSFAAAGRKLSMPPNTISRRLQALEAAMGVRLLQRSTRQLNMTA 60 M DLND+ LF VV GSF+AA R L+ P + +SRR+ LE +GVRLLQRSTR + +T Sbjct: 1 MEDLNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTE 60 Query: 61 AGREFFERCAPGLEDIEHASASLTQSQG-EPSGSLRVAAPVDFFDNFSIEWMHEFMHLYP 119 G FF C + + A+ +T+ G P+G LRV++P+ F + F+ +P Sbjct: 61 VGSAFFTHC-EAMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHVFLAPLLARFLCAHP 119 Query: 120 KVQLEFVLNDGRADLIAEGIDLAFR-GGVLPDSSLVARKLVQSHMALIASPRYLERAGTP 178 V+LE L++ R D+I EG D+A R L DSSLV R S L ASP Y+ G Sbjct: 120 DVRLELELSNRRVDVIGEGFDVAMRVRSTLEDSSLVVRTFGTSQQVLAASPAYVRAHGPF 179 Query: 179 QALADLVGH-ACLATSQAPQHTVWKLEGPHGP-ENVRVVPRLCINTAQGQLRAARAGLGI 236 + L G Q W+L+GP G + P + + Q ++ A G+G+ Sbjct: 180 DTVQSLQGQRGLGPGGLPGQAQRWRLQGPDGEVAEIDYAPAMVTDDMQLVMQTAIGGVGL 239 Query: 237 ALLPTMLASEDLRNGSLINILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLERGI 296 ALLP +A + G L+ +LP Y+ +AV+ RR L AV A IEF A +L + + Sbjct: 240 ALLPFNVAHGAIARGELVVVLPQYRGAPHQLHAVFPSRRGLVPAVRAFIEFLAVELSQTM 299 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 164 bits (416), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 142/288 (49%) Query: 1 MLDLNDIWLFVHVVRAGSFAAAGRKLSMPPNTISRRLQALEAAMGVRLLQRSTRQLNMTA 60 M I F V GS +AA R + P I RRL ALE +GV+LLQR+TR++ +T Sbjct: 1 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60 Query: 61 AGREFFERCAPGLEDIEHASASLTQSQGEPSGSLRVAAPVDFFDNFSIEWMHEFMHLYPK 120 G F E C L D+E A +++++ SG L ++AP F + F+ + Sbjct: 61 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRD 120 Query: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHMALIASPRYLERAGTPQA 180 V L LND AD+I EGID+A R L DS+LV+ KL ++H ++A+P YL R GTPQ+ Sbjct: 121 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQS 180 Query: 181 LADLVGHACLATSQAPQHTVWKLEGPHGPENVRVVPRLCINTAQGQLRAARAGLGIALLP 240 +L+ H CLA S W L +V + N + A AG G+A Sbjct: 181 PDELMRHNCLAMSSEGSQRGWTLRQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRS 240 Query: 241 TMLASEDLRNGSLINILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFF 288 + G L+ +L + YAV+ RR LP + A ++F Sbjct: 241 MWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFL 288 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 979,781 Number of extensions: 38730 Number of successful extensions: 240 Number of sequences better than 1.0e-08: 53 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 53 Length of query: 322 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 237 Effective length of database: 1,217,395 Effective search space: 288522615 Effective search space used: 288522615 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)