BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0320.p
         (273 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311444|ref|YP_003775536.1| bifunctional (P)ppGpp synthetas...   445   e-126
gi|300311292|ref|YP_003775384.1| (p)ppGpp synthetase I [Herbaspi...    57   1e-09

>gi|300311444|ref|YP_003775536.1| bifunctional (P)ppGpp synthetase
           II/guanosine-3',5'-bis pyrophosphate
           3'-pyrophosphohydrolase [Herbaspirillum seropedicae
           SmR1]
          Length = 753

 Score =  445 bits (1145), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/219 (96%), Positives = 215/219 (98%)

Query: 1   LGNALHTLGIEPELPSHIVERLLNESSAKTMDDLYAEIGIGTRMAPLVARHIMTMMDTGV 60
           LGNALHTLGIEPELPSHIVERLLNESSAKTMDDLYAEIGIGTRMAPLVARHIMTMMDTGV
Sbjct: 528 LGNALHTLGIEPELPSHIVERLLNESSAKTMDDLYAEIGIGTRMAPLVARHIMTMMDTGV 587

Query: 61  SVPQLDPEGHMLPNKPDPVVITGSEGASAQLSSCCMPIPGDRLTGYLKPDQTLIVHTQEC 120
           SVPQLDPEGHMLPNKPDPVVITGSEGASAQLSSCCMPIPGDRLTGYLK DQTLIVHTQEC
Sbjct: 588 SVPQLDPEGHMLPNKPDPVVITGSEGASAQLSSCCMPIPGDRLTGYLKADQTLIVHTQEC 647

Query: 121 ETAKRLHEKEPDRWIDLVWGHDLNRRFDCRITILIHNERGTLARIAAEIGESDANIVSVA 180
           +TAKRLHEKEPDRWI+LVWG DLNRRFDCRITILIHNERGTLARIAAEIGESDANIVSVA
Sbjct: 648 DTAKRLHEKEPDRWIELVWGQDLNRRFDCRITILIHNERGTLARIAAEIGESDANIVSVA 707

Query: 181 MDDEGGNGSMKYLRFTIQIEDRVHLARLMRGIRKIDSVA 219
           MDDEGGN SMKYLRFTIQ+EDRVHLAR MRGIR+IDSVA
Sbjct: 708 MDDEGGNASMKYLRFTIQVEDRVHLARTMRGIRRIDSVA 746


>gi|300311292|ref|YP_003775384.1| (p)ppGpp synthetase I
           [Herbaspirillum seropedicae SmR1]
          Length = 749

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 79  VVITGSEGASAQLSSCCMPIPGDRLTGYLKPDQTLIVHTQECETAKRLHEKEPDRWIDLV 138
           V++ G++G   QL+ CC P P D + G++   + + +H   C+    +    P+R I   
Sbjct: 606 VLVVGTDGLLTQLARCCKPAPPDAIAGFVTRGKGVSIHRVSCKNFAEMSSHAPERVIQTT 665

Query: 139 WGHDLNRR-FDCRITILIHNERGTLARIAAEIGESDANIVSVAMDDEGGNGSMKYLRFTI 197
           WG       +   I +L  + +G L  I+        N++ V+     G+  M    FT 
Sbjct: 666 WGAPARETVYPVDIFVLASDRQGLLRDISDIFLRDKINVIGVSTQSVKGHARMA---FTA 722

Query: 198 QIEDRVHLARLMRGIRKIDSV 218
           +I     L + +  IR++  V
Sbjct: 723 EIGSTEQLQKALTVIREVKGV 743


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 887,494
Number of extensions: 36911
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 273
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,222,130
Effective search space: 230982570
Effective search space used: 230982570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)