BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0312.p
         (414 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311451|ref|YP_003775543.1| anaerobic coproporphyrinogen II...   749   0.0  
gi|300312505|ref|YP_003776597.1| oxygen-independent coproporphyr...   110   2e-25

>gi|300311451|ref|YP_003775543.1| anaerobic coproporphyrinogen III
           oxidase oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/413 (87%), Positives = 381/413 (92%)

Query: 1   MIPIKPIPADIPAGQAASGPAQAALAFLKPGSLQLTALPPLSLYVHFPWCVRKCPYCDFN 60
           MI IKP+P    AGQ ASGPAQAALAFLKPGSLQLTALPPLSLYVHFPWCVRKCPYCDFN
Sbjct: 1   MISIKPVPVTAVAGQGASGPAQAALAFLKPGSLQLTALPPLSLYVHFPWCVRKCPYCDFN 60

Query: 61  SHEVKGSFPEEAYLDALRSDLEQSLPLIWGRKIHTIFIGGGTPSLLSAAGLDRLLSDLRT 120
           SHEVK  FPE+ YLDALR DLEQ+LPLIWGRKI++IFIGGGTPSLLSAAGLDRLLSDLRT
Sbjct: 61  SHEVKDGFPEQEYLDALRLDLEQALPLIWGRKIYSIFIGGGTPSLLSAAGLDRLLSDLRT 120

Query: 121 LLPFDGDIEITMEANPGTFEADKFRSYRDSGISRLSIGIQSFNGQHLHALGRIHDGDQAR 180
           LLP D DIEITMEANPGTFEADKFRSYRDSGI+RLSIGIQSFN  HL ALGRIHDG QA 
Sbjct: 121 LLPLDADIEITMEANPGTFEADKFRSYRDSGINRLSIGIQSFNSAHLQALGRIHDGGQAH 180

Query: 181 KAVEIAQANFDNFNLDLMYALPQQTLAEAKSDIETAIAFAPPHLSLYHLTLEPNTLFAKY 240
           +AVEIA ANFDNFNLDLMYALPQQTL +A++DI+TAI FAPPHLSLYHLTLEPNTLFAK+
Sbjct: 181 QAVEIAHANFDNFNLDLMYALPQQTLEQARTDIQTAIDFAPPHLSLYHLTLEPNTLFAKF 240

Query: 241 PPPVPDDDASADMQDMIAELTTAAGYVNYEVSAYAQPKRRARHNLNYWQFGDYLGIGAGA 300
           PP VPD+D SADMQDMI ELTT AGY NYEVSAYAQP RRARHNLNYWQFGDYLGIGAGA
Sbjct: 241 PPAVPDEDTSADMQDMIGELTTQAGYGNYEVSAYAQPGRRARHNLNYWQFGDYLGIGAGA 300

Query: 301 HSKLSFPHRIVRQMRYKHPQSYLEHAKAGTPVQEEAEIGRDALGFEFMLNALRLTEGFSP 360
           HSKLSFPHRIVRQMRYKHPQ+YL+H KAGT +QEEAEIGRDALGFEFMLNALRLTEGF P
Sbjct: 301 HSKLSFPHRIVRQMRYKHPQAYLQHIKAGTHIQEEAEIGRDALGFEFMLNALRLTEGFPP 360

Query: 361 NLFAERTGMSLNQIEKSLNLAEQKGMLYRDHALIRPTDLGRRFLNDLQEIFLS 413
           NLFAERTG++LNQI K L+LAE+KGMLYRDHALIRPT LGRRFLNDLQEIFLS
Sbjct: 361 NLFAERTGLALNQIGKQLDLAERKGMLYRDHALIRPTPLGRRFLNDLQEIFLS 413


>gi|300312505|ref|YP_003776597.1| oxygen-independent
           coproporphyrinogen III oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 483

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 9/251 (3%)

Query: 35  LTALPPLSLYVHFPWCVRKCPYCDFNSHEVKGSFPEEAYLDALRSDLEQSLPLIWG-RKI 93
           ++A   LSLY+H P+C   C YC  N    K       YL  L+ ++     L  G  ++
Sbjct: 61  MSAWRALSLYLHIPFCDTICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQV 120

Query: 94  HTIFIGGGTPSLLSAAGLDRLLSDLR---TLLPFDGDIEITMEANPGTFEADKFRSYRDS 150
             +  GGGTP+ LS   +  L+  +R   TL P D   E ++E +P T   ++    R  
Sbjct: 121 EQLHFGGGTPTYLSDEQMSDLMDHIRHCFTLAP-DHVGEYSIEIDPRTVSVERVHKLRQQ 179

Query: 151 GISRLSIGIQSFNGQHLHALGRIHDGDQARKAVEIAQ-ANFDNFNLDLMYALPQQTLAEA 209
           G +R+S+G+Q F+ +   A+ R+   +Q  + +  A+ A F + ++DL+Y LP+Q +   
Sbjct: 180 GFNRISLGVQDFDPEVQLAVNRVQSEEQTLEIIRAARDAGFRSVSIDLIYGLPKQNVMSM 239

Query: 210 KSDIETAIAFAPPHLSLYHLTLEPNTLFAKY---PPPVPDDDASADMQDMIAELTTAAGY 266
              +   IA +P  +++Y+    P     +       +P  D+  DM  +     T+AGY
Sbjct: 240 SRTLAKVIAASPDRIAVYNYAHMPQLFKTQRQIKEEDLPSADSKLDMLSLCIRQLTSAGY 299

Query: 267 VNYEVSAYAQP 277
           V   +  +A+P
Sbjct: 300 VYIGMDHFAKP 310


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,149,258
Number of extensions: 46039
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 2
Length of query: 414
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,203,190
Effective search space: 392239940
Effective search space used: 392239940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)