BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0311.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311452|ref|YP_003775544.1| signal transduction containing ...   331   3e-92
gi|300311437|ref|YP_003775529.1| signal transduction containing ...    94   9e-21

>gi|300311452|ref|YP_003775544.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 399

 Score =  331 bits (848), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 175/189 (92%), Positives = 181/189 (95%)

Query: 1   VDPGKIDALDWLYSRGFAIIADGLPAQGASVFPFVESMALDAGVGHLPETGHWLHRLRGP 60
           VDP +IDALDWLYSRGF+I+ADGLPAQGASVFPFVES+ LDA +G LPET  WLH LRGP
Sbjct: 94  VDPARIDALDWLYSRGFSILADGLPAQGASVFPFVESIVLDASIGKLPETAQWLHGLRGP 153

Query: 61  HLAENVGDAVQFDACRVEGFRWFSGDYALHPDSRLSQKNSISRARLLKLLELVARDADAN 120
           HLAENV DAVQFDACRV+GFRWFSGDYALHPDSRLSQKNSISRARLLKLLELVARDADAN
Sbjct: 154 HLAENVADAVQFDACRVQGFRWFSGDYALHPDSRLSQKNSISRARLLKLLELVARDADAN 213

Query: 121 ELESLLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLLYARFPG 180
           ELESLLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLLYARFPG
Sbjct: 214 ELESLLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLLYARFPG 273

Query: 181 DESANPLLP 189
           DESANPLLP
Sbjct: 274 DESANPLLP 282


>gi|300311437|ref|YP_003775529.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score = 93.6 bits (231), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 8/204 (3%)

Query: 1   VDPGKIDALDWLYSRGFAIIADGLPAQGASV---FPFVESMALDAGV---GHLPETGHWL 54
           V P  +  +  L   G+    D + A+   +    P V+ + +D        L +     
Sbjct: 109 VTPELVVRVRELVKAGYVFALDDVVAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHF 168

Query: 55  HRLRGPHLAENVGDAVQFDACRVEGFRWFSGDYALHPDSRLSQKNSISRARLLKLLELVA 114
            R +   LAE V    QF+ C   GF +F G Y   P     +K   S+  ++ LL L+ 
Sbjct: 169 KRAQKELLAEKVETLQQFNDCVTFGFDYFQGYYFAKPMILQGKKLEASKMVIMHLLTLLV 228

Query: 115 RDADANELESLLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLL 174
           R+ D  E+   +K+D ALS  L +LV++  +GF   I +  QA+ +LGRRQL+RWLQ+LL
Sbjct: 229 RNVDNGEIVRFIKRDVALSLTLLRLVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILL 288

Query: 175 YARFPGDE--SANPLLPRXRARAR 196
           +A    ++  + +PL+     R +
Sbjct: 289 FANTDKEQAHTMSPLMILAATRGK 312


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 581,315
Number of extensions: 21703
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)