BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0303.p (297 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311458|ref|YP_003775550.1| LysR family transcription regul... 556 e-160 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 204 8e-54 gi|300311424|ref|YP_003775516.1| LysR family transcription regul... 202 2e-53 gi|300313922|ref|YP_003778014.1| LysR family transcription regul... 186 2e-48 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 182 2e-47 >gi|300311458|ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 556 bits (1434), Expect = e-160, Method: Compositional matrix adjust. Identities = 268/297 (90%), Positives = 283/297 (95%) Query: 1 MRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTEAGQAYL 60 MRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTEAGQAYL Sbjct: 7 MRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTEAGQAYL 66 Query: 61 ERVHMILAEVDDAEALVSMETKRPAGTLAIYSNAGFGQSQLGEMLAAYAGIYPDVGLDVY 120 ERV MILAEVDDAEALVS+ETKRPAGTLAIY NAGFGQSQLGEML+AY+ YP+V LD+ Sbjct: 67 ERVRMILAEVDDAEALVSLETKRPAGTLAIYCNAGFGQSQLGEMLSAYSQAYPEVALDIS 126 Query: 121 LSDRSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVAKVILCASPAYLERAGAPAQPEDLS 180 LS+RSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVA+VILC SPAY+ R GAP QPEDLS Sbjct: 127 LSERSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCTSPAYIARQGAPEQPEDLS 186 Query: 181 RHSCLNFSHEYLRHHWHVNTEAGVMDVPIVSKVVSNSGVLLRDLALAGMGIVLRPSYSLG 240 RH+CLNFSHEYLRHHWHVNT GV+DVPIVSKVVSNSGVLLRDLALAGMGIVLRPSYSLG Sbjct: 187 RHNCLNFSHEYLRHHWHVNTNGGVLDVPIVSKVVSNSGVLLRDLALAGMGIVLRPSYSLG 246 Query: 241 DDLRCGKLVQVLPGFDMGQVVISMVYPSRRLLSAKVRSFADFISARFPHPETDPWLT 297 DDLR G+LVQVLPGFDMGQV++SMVYPSRRLLSAKVRSFA+FISARFPHPE DPWL+ Sbjct: 247 DDLRSGRLVQVLPGFDMGQVIMSMVYPSRRLLSAKVRSFAEFISARFPHPENDPWLS 303 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 204 bits (519), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 108/287 (37%), Positives = 174/287 (60%), Gaps = 1/287 (0%) Query: 1 MRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTEAGQAYL 60 + F V + GSFV+AAE L IS A +R + +LEA LG+RL+ R+TRRLSLTEAG YL Sbjct: 7 IECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGALYL 66 Query: 61 ERVHMILAEVDDAEALVSMETKRPAGTLAIYSNAGFGQSQLGEMLAAYAGIYPDVGLDVY 120 ER I+A +++A+ L+S + +P G L I + FG L + + +P++ LD+ Sbjct: 67 ERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISLDIT 126 Query: 121 LSDRSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVAKVILCASPAYLERAGAPAQPEDLS 180 LSDR +D+++EG D+ + + D++++ R+L + +CASPAYL+ G PA P +L+ Sbjct: 127 LSDRIVDIIDEGYDMAIRIA-RLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHELA 185 Query: 181 RHSCLNFSHEYLRHHWHVNTEAGVMDVPIVSKVVSNSGVLLRDLALAGMGIVLRPSYSLG 240 +H +++S+ + W N G + V + S++ N+G AL G+GI +P++ + Sbjct: 186 QHQTISYSYNQSKDEWQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQPTFMID 245 Query: 241 DDLRCGKLVQVLPGFDMGQVVISMVYPSRRLLSAKVRSFADFISARF 287 LR G+LV +L + ++ I VYPSR L AK+R+ DF++ F Sbjct: 246 QYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEAF 292 >gi|300311424|ref|YP_003775516.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 202 bits (515), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 116/284 (40%), Positives = 170/284 (59%), Gaps = 1/284 (0%) Query: 1 MRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTEAGQAYL 60 MRVFA+VVE GSF +AA+ + ++ A +R +ADLE HL TRL+NR+TRR++LTEAG+ YL Sbjct: 8 MRVFARVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTEAGERYL 67 Query: 61 ERVHMILAEVDDAEALVSMETKRPAGTLAIYSNAGFGQSQLGEMLAAYAGIYPDVGLDVY 120 R I++ VD+AEA S +P+G L I++ FGQ + ++ Y YPDV +++ Sbjct: 68 LRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPDVAVELT 127 Query: 121 LSDRSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVAKVILCASPAYLERAGAPAQPEDLS 180 L+ R D++EEG D+ + + D+ +I RQLG +LCASPAYL++ GAP QP DL Sbjct: 128 LAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGSTFSMLCASPAYLDKYGAPQQPADLL 187 Query: 181 RHSCLNF-SHEYLRHHWHVNTEAGVMDVPIVSKVVSNSGVLLRDLALAGMGIVLRPSYSL 239 H+CL S W + G V + S N + GMGI + P YS Sbjct: 188 NHACLQLVSPISPLDEWILEGPEGGTVVAVKSNFQVNVAEAMLTAIREGMGIGVLPIYSA 247 Query: 240 GDDLRCGKLVQVLPGFDMGQVVISMVYPSRRLLSAKVRSFADFI 283 D LR G +V+VLP + + + +YPSR+ L AK+ ++ D++ Sbjct: 248 VDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWM 291 >gi|300313922|ref|YP_003778014.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 186 bits (472), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 170/300 (56%), Gaps = 16/300 (5%) Query: 1 MRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTEAGQAYL 60 M+VF VV+ GS AAE LD+S V +R++A+LE +G RLL+R+TRRLSLT AG L Sbjct: 7 MQVFVTVVDSGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTPAGNELL 66 Query: 61 ERVHMILAEVDDAEALVSMETKRPAGTLAIYSNAGFGQSQLGEMLAAYAGIYPDVGLDVY 120 R +L +D + + P G L I ++ F Q+QL + + Y YP V +D+ Sbjct: 67 PRCRQMLEYSEDMRHALDAPDETPRGLLRITASTSFAQTQLIQAVVEYGRRYPGVAVDLL 126 Query: 121 LSDRSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVAKVILCASPAYLERAGAPAQPEDLS 180 DR+++LVEE ID+ + + + ++I R LGV + I+CA+P YL R G P + EDL+ Sbjct: 127 ALDRTVNLVEERIDLAIRMT-NRLEPNLIARPLGVCRSIICATPDYLARHGLPRKVEDLA 185 Query: 181 RHSCLNFSHEYL-RHHWHVNTE------------AGVMDVPIVSKVVSNSGVLLRDLALA 227 H+CL +H Y+ R W + + A V + + +N +L LA Sbjct: 186 LHNCL--THSYVGRSLWQFDPKKKKARSGRGASAAKPQSVAVGGSISANEVTVLLQAVLA 243 Query: 228 GMGIVLRPSYSLGDDLRCGKLVQVLPGFDMGQVVISMVYPSRRLLSAKVRSFADFISARF 287 G+GI P+Y++ + G+LVQ+LP ++ Q+ + VY SR+ + A +R+ DF++ RF Sbjct: 244 GVGIGHMPAYTVAPLVASGQLVQLLPDYEPLQLGMYGVYASRKHMPATLRTMLDFLAQRF 303 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 182 bits (463), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 104/299 (34%), Positives = 166/299 (55%), Gaps = 10/299 (3%) Query: 1 MRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTEAGQAYL 60 M+ F VVE GSFV A ++ S +R +++LE LG RLL+R+TRRLSLT+ G+ Y Sbjct: 7 MQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDEGRVYF 66 Query: 61 ERVHMILAEVDDAEALVSMETKRPAGTLAIYSNAGFGQSQLGEMLAAYAGIYPDVGLDVY 120 R +L + D E+ V + + + G L I + FG QL + + +P + L++ Sbjct: 67 ARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPLITLNIT 126 Query: 121 LSDRSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVAKVILCASPAYLERAGAPAQPEDLS 180 LSDR+IDL+EEG D+ S D+ M+ R L ++I CA+P +L R G P P +L Sbjct: 127 LSDRTIDLLEEGFDMAIRISALG-DSRMVARPLAPVRMIACAAPEFLARHGTPGTPAELR 185 Query: 181 RHSCLNFSHEYLRHHW---HVNTEAGVMDVPIVSKVVSNSGVLLRDLALAGMGIVLRPSY 237 + +++S+ W HV+ + V + S V N+G R +A+AG GI ++P + Sbjct: 186 DYPFISYSYRAGGDDWSFRHVHGD--TCQVRVRSTVYVNNGATCRAMAIAGQGIAIQPDF 243 Query: 238 SLGDDLRCGKLVQVLPGFDMG-QVVISMVYPSRRLLSAKVRSFADFISARFPHPETDPW 295 + ++ G+LV++ G+ G Q+V+ +YP+R L KV+ DF+ +F P PW Sbjct: 244 IVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLIEQFRVP---PW 299 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 879,692 Number of extensions: 36296 Number of successful extensions: 253 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 46 Length of query: 297 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 212 Effective length of database: 1,217,395 Effective search space: 258087740 Effective search space used: 258087740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)