BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0298.p
         (339 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311463|ref|YP_003775555.1| hypothetical protein Hsero_2148...   458   e-130

>gi|300311463|ref|YP_003775555.1| hypothetical protein Hsero_2148
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  458 bits (1178), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/338 (67%), Positives = 269/338 (79%), Gaps = 2/338 (0%)

Query: 3   GIDLTSHQARFHQRWPDLRDPHVRALAWLLYAPDLLAPEAVCWEGRVATLGQLSPEVAGW 62
              L+SHQ RFHQRWP+LRDPHVRALAWLLYAPDLLA +A CWE R+ATLG ++PEVAGW
Sbjct: 9   ATSLSSHQVRFHQRWPELRDPHVRALAWLLYAPDLLAQDAPCWECRIATLGPVAPEVAGW 68

Query: 63  LHDLQYDPAMNAALHAHLAQQPSGRLGRYAEKLLGFYLRQQDCLVAANLQVRNQGPTRET 122
           LHDL++DP +NAALHAHLA+QP+ RLGRYAE+LL FYL+QQD LVAANLQVR QGPT ET
Sbjct: 69  LHDLEHDPGLNAALHAHLARQPTARLGRYAEQLLTFYLQQQDWLVAANLQVRQQGPTHET 128

Query: 123 LGEFDFLIRSPEAENDGGVVHWEFATKFYLLQARELAATAQADA-FVGPNLADSLGRKMR 181
           LGEFDFL+R P  +++ G++HWEFATKFYLL  +  A        FVGPNLAD+LG+KMR
Sbjct: 129 LGEFDFLVRPP-GDDELGLIHWEFATKFYLLAPQSAADAKANAGAFVGPNLADTLGKKMR 187

Query: 182 KIMQQQLKLSEHPAAQAVLPAPVVAARALVKGWLFYPLDAALSLPPAMGIAADHCRGFWC 241
           KIMQQQL LS HPAA +VLPAPVVAARALVKGWLFY    A+ LP ++G+AADHCRGFWC
Sbjct: 188 KIMQQQLMLSAHPAAASVLPAPVVAARALVKGWLFYRHGEAVELPASLGVAADHCRGFWC 247

Query: 242 DAASLPCIEEETMCYAVLPRLSWLAPARLPAGQGMTLAQLRSTLEDMFSADDSPVMVAQC 301
           D   L    +    Y +LPRL+WLAPAR P  QG++L  L++ LE  F AD SPVMVAQC
Sbjct: 248 DLPRLAAQHQPDDLYLILPRLAWLAPARAPLAQGLSLPALQAALETAFLADQSPVMVAQC 307

Query: 302 RLQRGAEPEWLEVMRGFVVPPQWEARAAATVQHAVVPV 339
           R+ +GAEPE LE+ RGF+VPP WE RAA T +HA+V +
Sbjct: 308 RIAKGAEPELLELARGFIVPPGWEQRAADTARHALVRI 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,105,697
Number of extensions: 45780
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,212,660
Effective search space: 306802980
Effective search space used: 306802980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)