BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0296.p
         (395 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311465|ref|YP_003775557.1| alanine racemase [Herbaspirillu...   637   0.0  
gi|300313242|ref|YP_003777334.1| alanine racemase [Herbaspirillu...   124   1e-29

>gi|300311465|ref|YP_003775557.1| alanine racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 359

 Score =  637 bits (1643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/359 (85%), Positives = 330/359 (91%)

Query: 37  MPRPIVASISISALQHNLAVARAHAPNARVWGVLKANGYGHGLERAMRGFADADGLALVE 96
           MPRPIVASISISALQHNLAVARAHAP ARVWGVLKANGYGHGLERAMRGFA ADGLAL+E
Sbjct: 1   MPRPIVASISISALQHNLAVARAHAPGARVWGVLKANGYGHGLERAMRGFAAADGLALIE 60

Query: 97  PDYAVRLRELGWTKPILLLEGFFDAEDLPVLARHDIQFAVHCDEQIALLEQFVTDAAFHV 156
           PDYAVRLRELGWTKPILLLEGFFDA+DLPVLA+HDIQFAVHC+EQIA LE F   A+ H 
Sbjct: 61  PDYAVRLRELGWTKPILLLEGFFDADDLPVLAQHDIQFAVHCEEQIAQLEAFTAAASLHA 120

Query: 157 HLKMNSGMNRLGFKPEAFHAAHARVSKIASVRSITMMTHFANADDALNPSLPLSEQVRRF 216
           HLKMNSGMNRLGFKPE + AA+AR+ KI SV SIT+MTHFANADDA NP LPL+EQVRRF
Sbjct: 121 HLKMNSGMNRLGFKPETYRAAYARLQKIPSVASITLMTHFANADDAGNPLLPLAEQVRRF 180

Query: 217 QAGTEGLPGARSLCNSAADLMHGELAHDWVRPGIMLYGATPGGSSAADFGLRAAMTLESQ 276
           QAG+EGL G RSLCNSAADLMH ELA+DWVRPG+MLYG TPGG SAADFGLRAAMTLES+
Sbjct: 181 QAGSEGLDGPRSLCNSAADLMHAELANDWVRPGVMLYGGTPGGGSAADFGLRAAMTLESR 240

Query: 277 IIGVQDIPPGEAIGYGSRFVADKPMRIGVVACGYADGYPRHAPTGTPVLVDGIKTGTVGR 336
           IIG+Q +P GEAIGYGSRFVADKPM+IGVVACGYADGYPRHAP GTPVLVDG+KTGTVGR
Sbjct: 241 IIGIQQVPAGEAIGYGSRFVADKPMKIGVVACGYADGYPRHAPNGTPVLVDGVKTGTVGR 300

Query: 337 VSMDMLCVDLTELPRAGVGSRVELWGQQLPIDEVAFAAGTIGYELMCALAPRVAVREVD 395
           VSMDML VDLT +P A VGS+VELWG +LPIDEVA+AAGTIGYELMCALAPRVAVREVD
Sbjct: 301 VSMDMLTVDLTHIPDADVGSQVELWGSKLPIDEVAYAAGTIGYELMCALAPRVAVREVD 359


>gi|300313242|ref|YP_003777334.1| alanine racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 368

 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 176/359 (49%), Gaps = 21/359 (5%)

Query: 44  SISISALQHNLAVARAHAPNARVWGVLKANGYGHGLERAMRGFADADG----LALVEPDY 99
           +I + A+  N     A    AR   V+KA+ YG G    +R   DA      +ALV    
Sbjct: 10  TIDLPAIVANWKTLSARVAPARCGAVVKADAYGLGATMVVRALLDAGCREFFVALVSEGV 69

Query: 100 AVRLRELG--WTK--PILLLEGFFDAEDLPVLARHDIQFAVHCDEQIALLEQFVTDAAFH 155
           +++ + L   W K   + +L G    ++L  L  + +   ++  EQ+   + +     F 
Sbjct: 70  SLK-QTLADRWPKGARLHILNGTLPGDELLCL-HYGLTPVLNSLEQVRSWQGYARQLDFP 127

Query: 156 VH--LKMNSGMNRLGFKPEAFHAAHARVSKIASVRSITMMTHFANADDALNPSLPLSE-Q 212
           +   L++++GM RLG  P          + +A +    +M+H  +A++  NP   L++ Q
Sbjct: 128 LAAALQVDTGMARLGLAPAEVAQLTESRAGLAGIAPTFLMSHLVSAEETANP---LNQHQ 184

Query: 213 VRRFQAGTEGLPG-ARSLCNSAADLMHGELAHDWVRPGIMLYGATPGGSSAADFGLRAAM 271
           + RF A     P  A  L NS+   +  +     VRPG  LYG  PGG  A    +R  +
Sbjct: 185 LERFVAIRRHWPEIAGCLANSSGIFLGADFHFGCVRPGAALYGVHPGG--AGPNPMRPVL 242

Query: 272 TLESQIIGVQDIPPGEAIGYGSRFVADKPMRIGVVACGYADGYPRHAPTGTPVLVDGIKT 331
            L++ +I  +++  GE++GY   + A +P R+G +A GYADGY R A     + ++G++ 
Sbjct: 243 RLQAPLIQWRELQAGESVGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEA 302

Query: 332 GTVGRVSMDMLCVDLTELPRAGV--GSRVELWGQQLPIDEVAFAAGTIGYELMCALAPR 388
             +GRVSMD + VDL+ +  A +  G   ++   Q  I+ +A  AGT  YE++ +L  R
Sbjct: 303 PLIGRVSMDSITVDLSAIDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHR 361


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,338,583
Number of extensions: 61131
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 2
Length of query: 395
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,207,925
Effective search space: 372040900
Effective search space used: 372040900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)