BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0292.p (178 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311469|ref|YP_003775561.1| oxidative stress resistance two... 348 1e-97 gi|300310849|ref|YP_003774941.1| two component transcription reg... 141 4e-35 gi|300311515|ref|YP_003775607.1| two component response regulato... 139 1e-34 gi|300313830|ref|YP_003777922.1| response regulator protein [Her... 130 8e-32 gi|300313665|ref|YP_003777757.1| two component transcription reg... 126 1e-30 >gi|300311469|ref|YP_003775561.1| oxidative stress resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 253 Score = 348 bits (894), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 172/173 (99%), Positives = 173/173 (100%) Query: 6 RRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGPDE 65 RRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGPDE Sbjct: 81 RRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGPDE 140 Query: 66 LPGAPSETPETFEFGDFILDLGTRTLKKNGETISLTTGEFSVLKVFARNARQPLSREKLM 125 LPGAPSETPETFEFGDFILDLGTRTLKKNG+TISLTTGEFSVLKVFARNARQPLSREKLM Sbjct: 141 LPGAPSETPETFEFGDFILDLGTRTLKKNGDTISLTTGEFSVLKVFARNARQPLSREKLM 200 Query: 126 EMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVFIPEGKPR 178 EMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVFIPEGKPR Sbjct: 201 EMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVFIPEGKPR 253 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 141 bits (355), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 80/167 (47%), Positives = 106/167 (63%), Gaps = 3/167 (1%) Query: 6 RRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGPDE 65 R LR A P+IMLTA+GE +DRI+GLEMGADDYL KPF PREL ARI +VLRR Sbjct: 71 RNLR-ATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQALP 129 Query: 66 LPGAPSETPETFEFGDFILDLGTRTL-KKNGETISLTTGEFSVLKVFARNARQPLSREKL 124 P F + LDL R L ++G ++L+ EF +LKVF + + L+R++L Sbjct: 130 -PNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVLNRDQL 188 Query: 125 MEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVF 171 +E+ +GRE + FDRS+D+QISRLR+ + D P I+TV GYV Sbjct: 189 LELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVL 235 >gi|300311515|ref|YP_003775607.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 139 bits (350), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/171 (45%), Positives = 109/171 (63%), Gaps = 4/171 (2%) Query: 4 SXRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGP 63 + RR+R A P++MLTAKG+D DRIIGLE+GADDY+PKP +PRE+ ARI A+LRR Sbjct: 63 TLRRIR-AKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRASA 121 Query: 64 DELPGAPSETPETFEFGDFILDLGTRTLKKNGETISLTTGEFSVLKVFARNARQPLSREK 123 + +P +P G + R NG+ + LT+ EF++L+V ARNA +P+S++ Sbjct: 122 ENNEQSPY-SP--LAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQH 178 Query: 124 LMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVFIPE 174 L E GR FDR++DV +S +R+ I ++ IQTV+ LGY FI E Sbjct: 179 LSEQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 >gi|300313830|ref|YP_003777922.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 130 bits (326), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 6/159 (3%) Query: 14 QTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGPDELPGAPSET 73 P+IMLTA ++ DR++GLE+GADDY+ KP++PREL+ARI A+ RR G D S Sbjct: 75 NVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRIGIDS-----SAA 129 Query: 74 PETFEFGDFILDLGTRTL-KKNGETISLTTGEFSVLKVFARNARQPLSREKLMEMARGRE 132 P + F F LD RTL G+ + LT ++ +LK F + L R L E RGR+ Sbjct: 130 PRYYRFAGFSLDTVERTLVDSQGDIVPLTGMDYQLLKYFVEHPGDVLDRNVLCEETRGRD 189 Query: 133 YEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVF 171 DRSLDVQIS+LR + P I+TV G GYVF Sbjct: 190 AGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVF 228 >gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 126 bits (316), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 6/164 (3%) Query: 14 QTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLR--RKGPDELPGAPS 71 TP++MLTA+G +DRI+GLE+GADDYLPKPF+PREL+ARI +LR R P++L + Sbjct: 75 NTPLVMLTARGTLIDRIVGLEVGADDYLPKPFDPRELLARIKVILRRARSFPEKL---EA 131 Query: 72 ETPETFEFGDFILDLGTR-TLKKNGETISLTTGEFSVLKVFARNARQPLSREKLMEMARG 130 + F + LD R + +G TI+L ++ VL+ + R+ LSR+ L+ G Sbjct: 132 DRVSHIHFAGWKLDTQARQAISPSGVTITLGGSDYQVLRALLEHPRRALSRDFLLNTVYG 191 Query: 131 REYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVFIPE 174 +E FDRS+DV ISRLR+ + +P P I+TV GY+ + + Sbjct: 192 KEAMPFDRSIDVCISRLRQQLGDNPREPALIRTVRNTGYMLMAD 235 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.141 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 600,130 Number of extensions: 25596 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 25 Length of query: 178 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 99 Effective length of database: 1,245,805 Effective search space: 123334695 Effective search space used: 123334695 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)