BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0290.p (182 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 350 4e-98 gi|300309410|ref|YP_003773502.1| glutamine ABC transporter perme... 124 6e-30 gi|300310495|ref|YP_003774587.1| amino acid ABC transporter perm... 118 3e-28 gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 117 6e-28 gi|300311602|ref|YP_003775694.1| glutamine ABC transporter perme... 117 6e-28 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 350 bits (898), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 172/181 (95%), Positives = 179/181 (98%) Query: 1 VLAVARIVPWRPIHWPAAVYVSMMRGTPLLVQIFVVYYGLPGIGIEFSPLTAGVLTLSLN 60 VLAVARIVPWRPIHWPAA+YVSMMRGTPLLVQIFVVYYGLPG+GIEFSPLTAGVLTLSLN Sbjct: 40 VLAVARIVPWRPIHWPAAIYVSMMRGTPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLN 99 Query: 61 AGAYLSESLRGAILGVTHGQWNASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIK 120 A AYLSESLRGAILGVT GQWNA++SVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIK Sbjct: 100 ASAYLSESLRGAILGVTRGQWNAAFSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIK 159 Query: 121 DTSLVSVITVTELMLATKEVIAVTFRPLPLYLAAAAIYWILSLCFEALQHRLEKRLGKAH 180 DTSLVSVITVTELMLATKEVIAVTFRPLPLY+AAAAIYW+LSLCFEALQHRLEK+LGKAH Sbjct: 160 DTSLVSVITVTELMLATKEVIAVTFRPLPLYVAAAAIYWMLSLCFEALQHRLEKKLGKAH 219 Query: 181 Q 181 Q Sbjct: 220 Q 220 >gi|300309410|ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 124 bits (310), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 73/202 (36%), Positives = 106/202 (52%), Gaps = 23/202 (11%) Query: 2 LAVARIVPWR-----PIHWPAAVYVSMMRGTPLLVQIFVVYYGL------PGIGI----- 45 LA AR W+ + WP YVS +RGTPL VQI ++++ L P G+ Sbjct: 47 LAEARHGFWKYFLCYCVQWPIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGD 106 Query: 46 -------EFSPLTAGVLTLSLNAGAYLSESLRGAILGVTHGQWNASYSVGLTYFQTLRYI 98 + + VL ++LN+GAY+SE R I + GQ AS S+G++Y TLR + Sbjct: 107 LAREIRSHYGAFASAVLAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLATLRRV 166 Query: 99 IVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPLPLYLAAAAIY 158 ++PQA R +P + N I+++KD+SL S I + EL A + V R YL + IY Sbjct: 167 VLPQAFRRMLPPLGNNAIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIY 226 Query: 159 WILSLCFEALQHRLEKRLGKAH 180 W+++L AL LE R GK Sbjct: 227 WLITLALSALVRHLEARYGKGD 248 >gi|300310495|ref|YP_003774587.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 118 bits (296), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 109/180 (60%) Query: 1 VLAVARIVPWRPIHWPAAVYVSMMRGTPLLVQIFVVYYGLPGIGIEFSPLTAGVLTLSLN 60 +LA+ ++ +P+ A V+++RG P++VQ+F +Y+ LP IGI+ S AGV+ L + Sbjct: 37 LLALMKVSRLKPVALAGATIVNIIRGLPIIVQLFYIYFVLPDIGIQLSAFQAGVVGLGIA 96 Query: 61 AGAYLSESLRGAILGVTHGQWNASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIK 120 AY +E+ R I V GQ A+ S+G+ +R +++PQA RIA+P NTL+ ++K Sbjct: 97 YSAYQAENFRAGIEAVDMGQIEAAQSIGMRGPLIMRRVVLPQAFRIALPPYGNTLVMMLK 156 Query: 121 DTSLVSVITVTELMLATKEVIAVTFRPLPLYLAAAAIYWILSLCFEALQHRLEKRLGKAH 180 D+SLVS ITV E+ A + + + TF+ + +Y A +Y +LSL L RLE R K Sbjct: 157 DSSLVSTITVLEMTRAGQMIASSTFQNMTVYTTVAVLYLLLSLPLVFLIRRLEIRNSKGR 216 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 117 bits (293), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 102/181 (56%) Query: 1 VLAVARIVPWRPIHWPAAVYVSMMRGTPLLVQIFVVYYGLPGIGIEFSPLTAGVLTLSLN 60 V+A+ R+ P + A+ Y+ +++G PLLV +FV Y+GL G + +PL A ++ ++ Sbjct: 36 VIALWRVSPNAVLRGIASGYIQVVQGIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIY 95 Query: 61 AGAYLSESLRGAILGVTHGQWNASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIK 120 A+L E RG I V QW AS +G F+ L +I+PQAV+IA P ++ ++K Sbjct: 96 CAAFLGEIWRGCIQAVPKTQWEASECLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVK 155 Query: 121 DTSLVSVITVTELMLATKEVIAVTFRPLPLYLAAAAIYWILSLCFEALQHRLEKRLGKAH 180 +TSL SVI +L A + + TF+P ++ A IY+ L AL E++L +H Sbjct: 156 NTSLASVIGFVDLSRAGQIINNSTFQPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSH 215 Query: 181 Q 181 + Sbjct: 216 R 216 >gi|300311602|ref|YP_003775694.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 117 bits (293), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 57/138 (41%), Positives = 95/138 (68%) Query: 11 RPIHWPAAVYVSMMRGTPLLVQIFVVYYGLPGIGIEFSPLTAGVLTLSLNAGAYLSESLR 70 R I+ +Y++++RGTPLLVQ+F+ ++GLP +G+ G+L L + +GAY+SE +R Sbjct: 50 RVIYGLCTIYLTLVRGTPLLVQLFLWFFGLPHVGVILPAYVCGILGLGIYSGAYVSEIVR 109 Query: 71 GAILGVTHGQWNASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITV 130 GAI + GQ A+ S+GL Y +R +I+PQA +P + N I+LIK+++LVS++T+ Sbjct: 110 GAIQSIERGQMEAARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTI 169 Query: 131 TELMLATKEVIAVTFRPL 148 +LM +++I+VT+R L Sbjct: 170 ADLMHEGEKIISVTYRSL 187 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 484,948 Number of extensions: 18662 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 19 Length of query: 182 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 102 Effective length of database: 1,241,070 Effective search space: 126589140 Effective search space used: 126589140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 127 (53.5 bits)