BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0287.p (581 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbasp... 1124 0.0 gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbasp... 303 2e-83 gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbasp... 229 5e-61 gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbasp... 224 2e-59 gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 91 3e-19 >gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 660 Score = 1124 bits (2907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/555 (98%), Positives = 553/555 (99%) Query: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNVDF 60 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGN+DF Sbjct: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDF 60 Query: 61 PARWRMAYVAQETPALDRPAIEYAIDGDAHLRQLEADLARAEAQPDDKHDGNHIAELHTA 120 PARWRMAYVAQETPALDRPAIEYAIDGDAHLRQLEA+LARAEAQPDDKHDGNHIAELHTA Sbjct: 61 PARWRMAYVAQETPALDRPAIEYAIDGDAHLRQLEAELARAEAQPDDKHDGNHIAELHTA 120 Query: 121 LADADAYTVRSRAEQLLLGLGFSLEQMARPVASFSGGWRMRLNLAQALMCPSDLLLLDEP 180 LADADAYTVRSRAEQLLLGLGFSLEQM RPVASFSGGWRMRLNLAQALMCPSDLLLLDEP Sbjct: 121 LADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEP 180 Query: 181 TNHLDLDAIIWLEDWLKRYAGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSSFER 240 TNHLDLDAIIWLEDWLKRY GTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYS+FER Sbjct: 181 TNHLDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFER 240 Query: 241 QRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAA 300 QRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAA Sbjct: 241 QRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAA 300 Query: 301 EFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGIDFSLQSGQRIGLLGV 360 EFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGIDFSLQ+GQRIGLLGV Sbjct: 301 EFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGIDFSLQNGQRIGLLGV 360 Query: 361 NGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAPDVR 420 NGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAPDVR Sbjct: 361 NGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAPDVR 420 Query: 421 EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETR 480 EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETR Sbjct: 421 EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETR 480 Query: 481 EALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDYKDWLFKTKLAA 540 EALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDYKDWLFKTKLAA Sbjct: 481 EALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDYKDWLFKTKLAA 540 Query: 541 RNDAAAAAPLPTASQ 555 RNDAAAAAPLPTASQ Sbjct: 541 RNDAAAAAPLPTASQ 555 >gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 532 Score = 303 bits (777), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 183/541 (33%), Positives = 285/541 (52%), Gaps = 28/541 (5%) Query: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNVDF 60 M+ +++Q G KPL EN+ + G++ GLIGANG GKS+ +L G+L GNV Sbjct: 1 MLSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 Query: 61 PARWRMAYVAQETPALDR-PAIEYAIDGDAHLRQLEADLARAEAQPDDKHDGN-HIAELH 118 R+ + Q+ A + ++ + G + ++ A PD D A+L Sbjct: 61 DVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLE 120 Query: 119 TALADADAYTVRSRAEQLLLGLGFSLEQMARPVASFSGGWRMRLNLAQALMCPSDLLLLD 178 A+ D YT +RA +LLLG+G +EQ P+++ + GW++R+ LAQAL D+LLLD Sbjct: 121 AKFAEYDGYTAEARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLD 180 Query: 179 EPTNHLDLDAIIWLEDWLKRYAGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSSF 238 EPTN+LD++ I WLE+ L T++IISHDR FL+ V + +D LK Y GNY + Sbjct: 181 EPTNNLDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDY 240 Query: 239 ----ERQRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELA 294 + R+ QL A K + + A LQ F+ RF A +KARQA SR K + K++ Sbjct: 241 MLASSQARAQQLAANA----KAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIK--- 293 Query: 295 PLRAAAEFSFEFREPLSAPNPLLVMEKVNAGYH--IEGKNGAPDEDKIIVHGIDFSLQSG 352 E +P S NP + E + +E + D+ I +++G Sbjct: 294 ---------VEDIKPSSRVNPFIRFEGEKKLHRLAVETQGITKTYDRDIFKNFSIMVEAG 344 Query: 353 QRIGLLGVNGAGKSTLIKTVAGEID---PLSGTARLGKGLVIGYFAQHQVEMLRHDESPL 409 ++I ++G NGAGK+TL++++ G++ P G + + +GY Q E E+ Sbjct: 345 EKIAIIGANGAGKTTLLRSIGGDVTGLHPDGGLVKWAENANVGYMPQDPTEEFAGGETLT 404 Query: 410 -WHLTRLAPDVREQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLL 468 W +Q +R LG F+G S+ SGGEK R+ ++ R N+LL+ Sbjct: 405 DWMGKWTQEGDDDQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLM 464 Query: 469 DEPTNHLDLETREALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDD 528 DEPTNH+D+E+ E+L +AL ++ GTL+ VSHDR + + + L V +G++ F G +D Sbjct: 465 DEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVKDGQVIDFQGGYED 524 Query: 529 Y 529 Y Sbjct: 525 Y 525 >gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 640 Score = 229 bits (584), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 181/553 (32%), Positives = 280/553 (50%), Gaps = 50/553 (9%) Query: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNVDF 60 +I L G LL++ + +L G++IGLIG NG GKSSL ++ G D G + Sbjct: 3 VISLSDAQLAFGHVALLDHAEFSLETGERIGLIGRNGTGKSSLLKIIAGRSKLDDGLLVM 62 Query: 61 PARWRMAYVAQETPALDRPAIEYAIDGDAHLRQLEADLARAEA---QPDDKHDGNHIAEL 117 ++AYV QE + + A+ + L +L A LA EA Q +D + + Sbjct: 63 QQNLKIAYVDQEPHFPEEMTVFDAVA--SGLGELPALLAEYEAITGQFGGDNDDALLERM 120 Query: 118 H---TALADADAYTVRSRAEQLLLGLGFSLEQMARPVASFSGGWRMRLNLAQALMCPSDL 174 H T L ADA+++ ++ E L L +L + AR + SGG + R+ LA L+ D+ Sbjct: 121 HQIQTVLDAADAWSIGNKVETTLDKL--NLNRDAR-IGELSGGMKKRVALACGLVGNPDV 177 Query: 175 LLLDEPTNHLDLDAIIWLEDWLKRYAGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGN 234 LLLDEPTNHLD +I+WLE L+ + G++L I+HDR FLD V I+ +D K+ + GN Sbjct: 178 LLLDEPTNHLDFGSILWLEGLLRDFKGSILFITHDRSFLDNVSTRIIELDRGKILSFPGN 237 Query: 235 YSSFERQRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELA 294 +++++ +++ EL+A ++ + A F+ + + K QA+ R + ++ L Sbjct: 238 FTTYQTRKA---ELLA----NEEVENAKFDKFLAQEEVWIRKGVQAR-RTRDEGRVRRLE 289 Query: 295 PLRA--------AAEFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGID 346 LR + E + + +E VN Y P K IV Sbjct: 290 ALRVQRSERRERQGQVKLEVGTGERSGKIVAELENVNKAY-------GP---KTIVRDFS 339 Query: 347 FSLQSGQRIGLLGVNGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDE 406 L G ++GL+G NGAGK+TL+K + GE P SGT + G + + YF Q + ++ ++E Sbjct: 340 TILMRGDKVGLIGQNGAGKTTLLKLILGEEAPDSGTVKQGTKMQVAYFDQMRAQL--NEE 397 Query: 407 SPLWHLTRLAPDVRE-----QELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQ 461 + L D E + + +L F F A S + SGGE+ RL LA + + Sbjct: 398 TTLADTIAPGSDWVEVNGQRKHVMTYLSDFLFAPERARSPVRTLSGGERNRLLLARLFAK 457 Query: 462 RPNLLLLDEPTNHLDLETREALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGK--L 519 N+L+LDEPTN LD++T E L L ++EGT+ LVSHDR L Q +I +EG Sbjct: 458 PANVLVLDEPTNDLDIDTLELLEELLEEYEGTVFLVSHDRMFLDNVVTQ-VIASEGNGVW 516 Query: 520 QPFDGDLDDYKDW 532 + + G Y DW Sbjct: 517 REYVG---GYSDW 526 >gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 555 Score = 224 bits (570), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 167/540 (30%), Positives = 274/540 (50%), Gaps = 50/540 (9%) Query: 14 KPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNVDFPARWRMAYVAQET 73 + +L+++ L+ PG KIG++G NG+GKS+L ++ G +G + Y+ QE Sbjct: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQE- 77 Query: 74 PALD-----RPAIEYAIDGDAHLRQLEADL---ARAEAQPDDKHDGNHIAELHTALADAD 125 P LD R +E A+ G+ Q + D A AE D A L +A AD Sbjct: 78 PQLDAEKTVRQEVESAL-GEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIIAAAD 136 Query: 126 AYTVRSRAEQLLLGLGFSLEQMARPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHLD 185 ++ + E + L + SGG + R+ L + L+ D+LLLDEPTNHLD Sbjct: 137 GNSLNQQLE--MAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLD 194 Query: 186 LDAIIWLEDWLKRYAGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSSFERQRSAQ 245 +++ WLE +L+R+ GT++ I+HDR FLD I+ +D + GNYSS+ Q+ A+ Sbjct: 195 AESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEAR 254 Query: 246 LELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAAEFSFE 305 L+ +Q+ A ++ + K RQA+S+ + L++ EL +E+ ++ Sbjct: 255 LKQEEASESARQKTIAKELEWV----RQNPKGRQAKSKAR-LARFNEL------SEYEYQ 303 Query: 306 FR---EPLSAP------NPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGIDFSLQSGQRIG 356 R + + P N ++ + V+ GY D++++ ++F + +G +G Sbjct: 304 KRNETQEIFIPVAERLGNEVIEFKNVSKGYG----------DRLLIDDLNFKIPAGAIVG 353 Query: 357 LLGVNGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLA 416 ++G NGAGKSTL + +AG P SG LG + + Q + ++ ++ ++ Sbjct: 354 IIGPNGAGKSTLFRMLAGRETPDSGEVVLGPTVKVSLVDQSREDL--GNKKTVFEDVSGG 411 Query: 417 PDVR-----EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEP 471 D+ E R +LG FNF G + SGGE+ RL LA + Q N+LLLDEP Sbjct: 412 ADILTVGRFEMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEP 471 Query: 472 TNHLDLETREALTMALAQFEGTLVLVSHDRHLL-RATTDQFLIVAEGKLQPFDGDLDDYK 530 +N LD+ET AL AL +F GT++++SHDR L R T + ++ FDG+ +Y+ Sbjct: 472 SNDLDVETLRALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQEYE 531 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 101/399 (25%), Positives = 168/399 (42%), Gaps = 77/399 (19%) Query: 154 FSGGWRMRLNLAQALMCPSDLLLLDEPTNHLDLDAIIWL----EDWLKRYAGTLLIISHD 209 SGG R+ A AL+ +L++LDEPT LD+ I + ++ +K T + +SHD Sbjct: 180 VSGGQLQRVMAAMALVTGPELVILDEPTTALDVTTQIEVLRAFKNVVKELGTTAVYVSHD 239 Query: 210 RDFLDGVVNVIVHIDDRKLKRYSGNYSSFERQRSAQLELMAGMIEKQQRQRAHLQSFIDR 269 + + + I+ + D + R +G+ S Q A S+ Sbjct: 240 LAVVAQMADRIIVLRDGAV-RETGSTS--------------------QVLHAPADSYTQC 278 Query: 270 FKAKATKARQAQSRMKALSKMEELAPLRAAAEFSFEFREPLSAPNPLLVMEKVNAGYHIE 329 A A+ A + + ++ E+ P AE A PLL + + AGY Sbjct: 279 LLAAASPAAR-------VVQLREILPATLPAE----------ARAPLLRISGLVAGY--- 318 Query: 330 GKNGAPDEDKI----IVHGIDFSLQSGQRIGLLGVNGAGKSTLIKTVAGEIDPLSGTARL 385 GAPD + I+ I+ ++Q G +G++G +G+GK+TL + VAG I P G+ +L Sbjct: 319 ---GAPDRLGLPGVRILDDINLTIQRGSTVGIIGESGSGKTTLARAVAGMIAPARGSIQL 375 Query: 386 G--------KGLVIGYFAQHQVEMLRHDES-------------PLWHLTRLAPDVREQEL 424 +G F + Q+ D + PL L + + Sbjct: 376 DGETLSPTLEGRTREQFRRVQIVFQNADTALNPSHSIGRILNRPLSFYHGLKGEAMRRRT 435 Query: 425 RNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETREALT 484 L T+ A SGG+K R+ LA + +P+L+L DE T+ LD A+ Sbjct: 436 AELLDLVQLPATVIDRLPAELSGGQKQRVNLARALAAKPDLILCDEVTSALDTVVAAAIL 495 Query: 485 MALAQFEGTL----VLVSHDRHLLRATTDQFLIVAEGKL 519 LA+ L + +SHD +RA D +++ G++ Sbjct: 496 ELLAELRRELQVSYMFISHDISTVRAICDDIVVLYAGRM 534 Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 24/217 (11%) Query: 12 GVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNVDFPARWRMAYVAQ 71 GV+ +L++++LT+ G +G+IG +G+GK++L + G + +G++ Sbjct: 328 GVR-ILDDINLTIQRGSTVGIIGESGSGKTTLARAVAGMIAPARGSIQ------------ 374 Query: 72 ETPALDRPAIEYAIDGDA--HLRQLEADLARAEAQPDDKHDGNHIAELHTALADA-DAYT 128 LD + ++G R+++ A+ + H I + Sbjct: 375 ----LDGETLSPTLEGRTREQFRRVQIVFQNADTALNPSHSIGRILNRPLSFYHGLKGEA 430 Query: 129 VRSRAEQLLLGLGFSLEQMARPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHLDL-- 186 +R R +LL + + R A SGG + R+NLA+AL DL+L DE T+ LD Sbjct: 431 MRRRTAELLDLVQLPATVIDRLPAELSGGQKQRVNLARALAAKPDLILCDEVTSALDTVV 490 Query: 187 -DAIIWLEDWLKR-YAGTLLIISHDRDFLDGVVNVIV 221 AI+ L L+R + + ISHD + + + IV Sbjct: 491 AAAILELLAELRRELQVSYMFISHDISTVRAICDDIV 527 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,802,427 Number of extensions: 80965 Number of successful extensions: 916 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 903 Number of HSP's successfully gapped: 48 Length of query: 581 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 491 Effective length of database: 1,193,720 Effective search space: 586116520 Effective search space used: 586116520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)