BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0281.p (590 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis tra... 907 0.0 gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis tra... 465 e-132 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 461 e-131 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 368 e-103 gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 352 4e-98 >gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/605 (83%), Positives = 534/605 (88%), Gaps = 17/605 (2%) Query: 1 MKSLKAQLLSALVVMWIGLLALAAWSAFSARETMIEERKDGLRRVVEAANGVVNSYVADV 60 MKSLKAQLLSALVVMW GLL LAAWSAFSARE MI+ERKDGLRRVVEAANGVV SYVADV Sbjct: 1 MKSLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVADV 60 Query: 61 AAGKISKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMIGKNVADRKDSEG 120 AAG++SKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAM+GKNVADRKDSEG Sbjct: 61 AAGRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEG 120 Query: 121 KAYYVEMMKVGQEKGQGFVQYMGRLPGTDDSNRTPKMSYVVHNKTWDWFIVTGVFLSDVQ 180 KAYYVEMMKVGQEK GFVQYMGRLPGTDDSNRTPKMSYVVHN+ WDWFIVTGVFLSDVQ Sbjct: 121 KAYYVEMMKVGQEKQHGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQ 180 Query: 181 AQFRSDLFKLLGILVVVGGLVSLMMLAIIRRITGSLGGEPAYAVAIATRIASGDLTVRVD 240 AQFR+DLF+LLGIL+VVG +VS+MMLAIIRRITGSLGGEPAYAV IATRIA+GDLTV+V Sbjct: 181 AQFRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQ 240 Query: 241 TRAGDNRSLLFEMATMRERLGGVIKGIRQGTDAIDVGAREIAAGNLDLSSRTEEQAGSLA 300 TR GD RSLL+ MATMRERL GVIKGIRQGTDAID+GAREIAAGNLDLSSRTEEQAGSLA Sbjct: 241 TRPGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLA 300 Query: 301 TTASNMDTLTATVKQNADNARQAGQLANNASEIAKRGGEVVGQVVQTMEGITESSRKISD 360 TTASNMD LTATVKQNADNARQAGQLA++AS+IA RGGEVVGQVVQTMEGIT SSRKI+D Sbjct: 301 TTASNMDGLTATVKQNADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIAD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIED 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIED Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIED 420 Query: 421 SVQRVGDGSDQVARAGETMGEVVSAVHRLTDIVSEISAASEEQRRGIEQVNLAIGEMDQV 480 SVQRVG GSDQVARAG+TMGEVV+AV LTDIV EISAASEEQR GIEQVNLAIGEMDQV Sbjct: 421 SVQRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQV 480 Query: 481 TQQNAALVEEAAAAAGSLEEQARRLKAAVATFRVEGEEGAAASVPVA------------- 527 TQQNAALVE+AAAAAGSLEEQARRLKAAV+TFRV+GEE +A PVA Sbjct: 481 TQQNAALVEQAAAAAGSLEEQARRLKAAVSTFRVDGEENLSA--PVASSLATATATATPT 538 Query: 528 -VPKAAPVVAKAAIPVKPLP-KPAAKPLVKAAAPLPPPGKPAAPAKPASAGRSSPANDDG 585 V KA A KPL KP KP AA P A AKPASA ++ PA DDG Sbjct: 539 AVRKAPAAAAIPVASAKPLAGKPLTKPAGGAAPLPAPAKAAPAAAKPASAAKALPAGDDG 598 Query: 586 DWETF 590 DWETF Sbjct: 599 DWETF 603 >gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 465 bits (1197), Expect = e-132, Method: Compositional matrix adjust. Identities = 252/483 (52%), Positives = 330/483 (68%), Gaps = 3/483 (0%) Query: 3 SLKAQLLSALVVMWIGLLALAAWSAFSARETMIEERKDGLRRVVEAANGVVNSYVADVAA 62 SLK +L LV W+ LL L+ W A+ R+ I ER+ GL+ V E A + Y + Sbjct: 5 SLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAKLESD 64 Query: 63 GKISKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMIGKNVADRKDSEGKA 122 GK+S+E+AQK A+ RI RY GD Y+ + D+ V++M P N + G+N+ D KD++G Sbjct: 65 GKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDAKGNE 124 Query: 123 YYVEMMKVGQE-KGQGFVQYMGRLPGTDDSNRTPKMSYVVHNKTWDWFIVTGVFLSDVQA 181 Y + G G+G+++Y PG+D +PKM +V K W+W ++ V+ D+QA Sbjct: 125 LYKMIAATGSSGAGKGYLEYWWPRPGSDQP--SPKMGFVKRFKPWNWDLICSVYSDDIQA 182 Query: 182 QFRSDLFKLLGILVVVGGLVSLMMLAIIRRITGSLGGEPAYAVAIATRIASGDLTVRVDT 241 FR L + + +L+ +G L+SL+ + R I S+GGEP A +A +IA+GDLT + T Sbjct: 183 DFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVIHT 242 Query: 242 RAGDNRSLLFEMATMRERLGGVIKGIRQGTDAIDVGAREIAAGNLDLSSRTEEQAGSLAT 301 GD SL+ +A R+RL + GI+Q T++I EIA GN+DLS+RTE+QAGSL Sbjct: 243 TQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSLEE 302 Query: 302 TASNMDTLTATVKQNADNARQAGQLANNASEIAKRGGEVVGQVVQTMEGITESSRKISDI 361 TAS M+ LTATVKQNA NA+ A QLA+ A+++A +GGEVVGQVVQTME I SSRKI DI Sbjct: 303 TASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIVDI 362 Query: 362 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDS 421 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+DS Sbjct: 363 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDDS 422 Query: 422 VQRVGDGSDQVARAGETMGEVVSAVHRLTDIVSEISAASEEQRRGIEQVNLAIGEMDQVT 481 V +V G+ V RAG+TM EVVS++ ++ +VSEI+ AS EQ GIEQV AI +MD+ T Sbjct: 423 VGKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDETT 482 Query: 482 QQN 484 QQN Sbjct: 483 QQN 485 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 461 bits (1185), Expect = e-131, Method: Compositional matrix adjust. Identities = 282/565 (49%), Positives = 367/565 (64%), Gaps = 23/565 (4%) Query: 3 SLKAQLLSALVVMWIGLLALAAWSAFSARETMIEERKDGLRRVVEAANGVVNSYVADVAA 62 S +L LV+ I LLA++ +SA R +EERK L + + A +V Y A + Sbjct: 5 SFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGALADS 64 Query: 63 GKISKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMIGKNVADRKDSEGKA 122 G +SKE+AQK A + I ++RY D Y I S +++M P + GK++++ KD G Sbjct: 65 GALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDPAGNN 124 Query: 123 YYVEMMKVGQEKGQGFVQYMGRLPGTDDSNRTPKMSYVVHNKTWDWFIVTGVFLSDVQAQ 182 +VE+ K G + GFV Y+ P + PK S+V+ K WDW + TG ++ D+ A Sbjct: 125 LFVEITKAGSKPEGGFVHYL--WPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDINAA 182 Query: 183 FRSDLFKLLGILVVVGGLVSLMMLAIIRRITGSLGGEPAYAVAIATRIASGDLTVRVDTR 242 F L+++ + V + +++ I I ++GG+PA A +A RIA GDLT ++T Sbjct: 183 FLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNIETA 242 Query: 243 AGDNRSLLFEMATMRERLGGVIKGIRQGTDAIDVGAREIAAGNLDLSSRTEEQAGSLATT 302 GD+ SLL+ + +MR+ L I I+ I ++EIA+GNLDLS RTE+QAGS+ T Sbjct: 243 PGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIEET 302 Query: 303 ASNMDTLTATVKQNADNARQAGQLANNASEIAKRGGEVVGQVVQTMEGITESSRKISDII 362 AS M+ LTATVKQNADNARQA QLA +ASE+A +GG VV QVVQTMEGIT+SSRKI+DII Sbjct: 303 ASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIADII 362 Query: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSV 422 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+DSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSV 422 Query: 423 QRVGDGSDQVARAGETMGEVVSAVHRLTDIVSEISAASEEQRRGIEQVNLAIGEMDQVTQ 482 +V GS V +AG TM EVV++V R+TDIV EIS+AS+EQ GI +V AI +MD+ TQ Sbjct: 423 AKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQ 482 Query: 483 QNAALVEEAAAAAGSLEEQARRLKAAVATFRVEGEEGAAASVPVAVPKAAPVVAKAAIPV 542 QNAALVE+AAAAA SL++QA L V F V+G + AS+ P+AA Sbjct: 483 QNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQ---ASIAPTAPQAA---------- 529 Query: 543 KPLPKPAAKPLVKAAAPLPPPGKPA 567 KPA +P+ P PP PA Sbjct: 530 ----KPATRPV----QPTTPPATPA 546 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 368 bits (944), Expect = e-103, Method: Compositional matrix adjust. Identities = 203/316 (64%), Positives = 242/316 (76%) Query: 203 LMMLAIIRRITGSLGGEPAYAVAIATRIASGDLTVRVDTRAGDNRSLLFEMATMRERLGG 262 L+ + + R + LGGEP YA IA +IA GDLT V T+ GDN SLLF + MR+ L Sbjct: 201 LIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDSLVS 260 Query: 263 VIKGIRQGTDAIDVGAREIAAGNLDLSSRTEEQAGSLATTASNMDTLTATVKQNADNARQ 322 ++ +RQGT I+ + EIA+GNLDLSSRTE+QA SL TAS M+ L TVKQNADNA+Q Sbjct: 261 IVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADNAKQ 320 Query: 323 AGQLANNASEIAKRGGEVVGQVVQTMEGITESSRKISDIIGVIDGIAFQTNILALNAAVE 382 A QLA +ASE+A +GGEVV QVV TM+GI SSRKI DII VIDGIAFQTNILALNAAVE Sbjct: 321 ASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNAAVE 380 Query: 383 AARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSVQRVGDGSDQVARAGETMGEV 442 AARAGEQGRGFAVVASEVRSLAQRSA AAKEI LI DSV ++ GS V +AG+TM V Sbjct: 381 AARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTMENV 440 Query: 443 VSAVHRLTDIVSEISAASEEQRRGIEQVNLAIGEMDQVTQQNAALVEEAAAAAGSLEEQA 502 V++V R+TD+V+EIS AS+EQ GI QVN AI MD+ TQQN+ALVEEAAAAA S++EQA Sbjct: 441 VNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSMKEQA 500 Query: 503 RRLKAAVATFRVEGEE 518 L VATFR++ ++ Sbjct: 501 GALSGLVATFRLDAQQ 516 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 352 bits (904), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 217/356 (60%), Positives = 262/356 (73%), Gaps = 13/356 (3%) Query: 190 LLGILVVVGGLVSLMMLAIIRRITGSLGGEPAYAVAIATRIASGDLTVRVDTRAGDNRSL 249 L GI+ V+ LV+ + I R + LGGEPAYA IA +IASGDLT VD + GD SL Sbjct: 201 LTGIVAVISALVAFV---ITRSLLKQLGGEPAYAADIAQQIASGDLTADVDAKPGDTTSL 257 Query: 250 LFEMATMRERLGGVIKGIRQGTDAIDVGAREIAAGNLDLSSRTEEQAGSLATTASNMDTL 309 LF + MR+ L ++ +R+GT AI+ + EIA GN+DLSSRTE+QAG+L TAS M+ L Sbjct: 258 LFAIKKMRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQAGALEETASAMEEL 317 Query: 310 TATVKQNADNARQAGQLANNASEIAKRGGEVVGQVVQTMEGITESSRKISDIIGVIDGIA 369 +TVKQNADNARQA QLA +AS++A +GG+VVGQVV TMEGI SSRKI DII VIDGIA Sbjct: 318 MSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVDIISVIDGIA 377 Query: 370 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSVQRVGDGS 429 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEI LI DSV ++ GS Sbjct: 378 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLINDSVGQIEQGS 437 Query: 430 DQVARAGETMGEVVSAVHRLTDIVSEISAASEEQRRGIEQVNLAIGEMDQVTQQNAALVE 489 V +AG TM VV++V R+TD+V+EIS AS+EQ GI QVNLAI MD+ TQQN+ALVE Sbjct: 438 SLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEATQQNSALVE 497 Query: 490 EAAAAAGSLEEQARRLKAAVATFRVEGEEGAAASVPVAVPKAAPVVA---KAAIPV 542 EAAAAA S++ QA +L V+TF++ A P P +A V A +A +PV Sbjct: 498 EAAAAANSMKTQAEQLAGLVSTFKL-------AHSPAPGPVSAVVGAMGRRANLPV 546 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.129 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,270,253 Number of extensions: 45796 Number of successful extensions: 531 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 258 Number of HSP's successfully gapped: 73 Length of query: 590 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 499 Effective length of database: 1,188,985 Effective search space: 593303515 Effective search space used: 593303515 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)